Bacillus licheniformis ATCC 14580: BL01626
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Entry
BL01626 CDS
T00197
Symbol
ykqC
Name
(GenBank) essential RNase J1/J2, metallo-beta-lactamase superfamily protein YkqC
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bli
Bacillus licheniformis ATCC 14580
Pathway
bli03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bli00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BL01626 (ykqC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bli03019
]
BL01626 (ykqC)
Messenger RNA biogenesis [BR:
bli03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BL01626 (ykqC)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
RMMBL
SIS_2
DUF4453
Motif
Other DBs
NCBI-ProteinID:
AAU23206
UniProt:
Q65K50
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All DBs
Position
complement(1627582..1629249)
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AA seq
555 aa
AA seq
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MKFVKNDQTAVFALGGLGEIGKNTYGVQFQDEIVLIDAGIKFPEDELLGIDYVIPDYTYL
VKNEEKIKGLFITHGHEDHIGGIPYLLKQVNIPVYGGQLAIGLLRKKLEEHGLLRQTKLH
IIEEDDIVKFRKTSVSFFRTTHSIPDSYGIVVKTPQGNIVHTGDFKFDFTPVGEPANLTK
MAEIGKEGVLCLLSDSTNSEIPDFTMSERKVGESIDDIFRKVEGRIIFATFASNIHRLQQ
VIEAAVANGRKVAVFGRSMESAIEIGQTLGYIKCPKNTFVEANEINRLPAGKVTILCTGS
QGEPMAALSRIANGTHRQISINPGDTVVFSSSPIPGNTISVSRTINQLYRAGADVIHGAV
TNIHTSGHGGQEEQKLMLRLIKPKFFMPIHGEYRMQKMHVKLATDCGIPEENCFIMDNGE
VLALTSEEASVAGKIPSGNVYIDGSGIGDIGNIVLRDRRILSEEGLVIVVVSINMKEFKV
SAGPDLISRGFVYMRESGDLINDAQELIAGHLKKVMERKTTQWSEIKNEITDTLAPFLYE
KTKRRPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgttaaaaatgaccaaacggctgtatttgcccttggaggacttggggaaatc
ggcaaaaacacgtacggggtccagttccaggacgagatcgtgctcatcgatgcggggatt
aagtttccggaagacgagcttctcggaatcgactatgtcatccctgactacacttattta
gtcaaaaacgaagaaaaaatcaaaggtctttttattacgcacggacacgaagaccacatc
ggcggaattccgtacctgctcaaacaggtgaacattccggtttacggcggacagctcgcc
atcggccttctcaggaagaagcttgaagagcacggtttgcttcgccaaacaaagcttcat
atcattgaagaagacgatatcgtcaaattcagaaaaacgtcggtttcttttttcaggacg
acccacagcattccggactcatacgggattgtcgtaaaaacaccgcaaggaaacatcgta
cataccggtgactttaaattcgattttacaccggtgggcgaacccgccaacttgacaaag
atggccgaaatcggaaaagaaggcgtgctttgcctgctgtcagacagcacaaacagtgaa
atccctgatttcacgatgtcagagcgcaaagtcggagaaagcattgatgatattttccga
aaagtcgaaggccggatcatcttcgcaacctttgcgtcaaacatccaccgcctgcagcag
gtgatcgaagcggctgttgcaaacggacggaaggttgccgtatttgggcgaagcatggag
tcggcgatcgaaatcggccaaacgctcggatatattaagtgtccgaaaaacactttcgtt
gaagcgaatgaaatcaacaggctccctgccgggaaagtgacgattctctgtaccggaagc
caaggcgaaccgatggctgctctatctcgaattgcaaacggcacacaccggcaaatctcc
atcaatcccggggatacggtcgtattttcatcatctccgatcccgggcaatacgatcagc
gtcagccgcacgattaaccagctttaccgggcgggtgccgatgtcatccacggagctgtg
actaacattcacacctcgggacacggcggacaggaagagcaaaaactgatgctccgcctc
atcaagccaaagtttttcatgccgattcacggtgaatacagaatgcagaaaatgcatgtc
aaactggcgacagactgcggaattcctgaggaaaactgctttattatggacaacggggaa
gtgcttgctttgacaagcgaagaagcctcagttgcgggtaaaatcccgtcaggcaatgtt
tatattgacggaagcggcatcggcgacatcggcaatatcgtgcttcgcgaccgccggatt
ctttccgaagaagggctcgtcattgtcgttgtcagcatcaacatgaaagaattcaaagtg
tccgcagggcctgacttaatttccagaggatttgtctatatgagagaatccggtgattta
atcaatgatgcccaggaactgattgcaggacaccttaaaaaagtgatggagcgcaaaacg
acacagtggtctgaaattaagaacgagattacagacacgcttgctcctttcctctatgaa
aaaacaaaacgccggccgatgatccttccgattattatggaagtctaa
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