Bifidobacterium longum DJO10A: BLD_0162
Help
Entry
BLD_0162 CDS
T00707
Symbol
hrpA
Name
(GenBank) HrpA-like helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
blj
Bifidobacterium longum DJO10A
Brite
KEGG Orthology (KO) [BR:
blj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
blj03019
]
BLD_0162 (hrpA)
Enzymes [BR:
blj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BLD_0162 (hrpA)
Messenger RNA biogenesis [BR:
blj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BLD_0162 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
DEAD
Helicase_C
AAA_22
AAA_19
HA2_C
SLFN-g3_helicase
T2SSE
nSTAND3
AAA_30
Zeta_toxin
NACHT
ResIII
AAA_16
SRP54
AAA_11
TsaE
Motif
Other DBs
NCBI-ProteinID:
ACD97608
UniProt:
B3DQA9
LinkDB
All DBs
Position
complement(202309..206445)
Genome browser
AA seq
1378 aa
AA seq
DB search
MKYEYPAELPVSAARDEIASAVKRSQVVIVSGQTGSGKTTQLPKILLELGRGTHGKQIVH
TQPRRIAARTVAERIASEMGVKLGDEVGYQVRFTDESSPSTRLRVVTDGILLAQIQRDPK
LTRYDTIIIDEAHERSLNIDFLLGYLTALLPQRRDLKLIITSATIDSVKFQEHFEHALHE
KVPVIEVSGRTFPVQVVYEPLGTAPALMREVPGFAVGARPGDADYDELASAIAESDSDRP
RGRSGASYADDGITDMPTAVARACAELVIHSSHERGPRDILVFASGERDIHEFEAALRHH
YGPRADDMRRPDAIEIMPLFARLSAADQHKVFESHLHQRIVIATNVAETSLTVPGIRYVV
DPGSARISRYSKTAKVQRLPIEPISQASADQRSGRCGRVADGIAIRLYSREDYETRPRFT
EPEILRTSLGAVVLHMLSVGVARTAEDVTNFGFIDPPDMKAVSDGFNELTELKAIGRKRG
EVTLTHTGRQLARIPIDVRLGRMVIEAAKTGSPNLLAQVLVVVAFLSLQDPRERPDDKRE
DADRIHNRYADETSDFLTALNIWDRVFQADGDPSNNALRRICKTEYFSWLRMRQWKDLVS
QLRQMCKELKFKVGDPLPASRPGLEIRQLPLNQQAAHSLCCAWDADGIHKSMLAGLLSMM
GMQVVREPKASDFAGLTGSARARAMKRAQKQSKNDYQGARGTRFALFPASAVAKKTPSWV
MSTELVETSRLWARYSAAIDPAWAEPLAGQLTRTTYAEPHWSGSRGSAVATARVLLYGLP
IVQDRAVQWGRINPLEARDFLIRQGLVEGDIQQRFSYDDFVGKNRDILEDAADDASRTRQ
LADTVSDEDLFDFYNAVIPNDVTSVSDLAKWWKSEHDRQPNLLDFDPAKVERLASSDSVS
LDDYPDHWHTTGSDGQPIDLRLSYVYDPADPADGVTVHVPLKALSRITPDQFTWNVPGLL
DELILSMIKALPKQLRVQFVPAPDAARAIRDWIDEHYPDLPGSGSQQKPNLPPVDEDGTT
VGWPDLAHVFTKAAIATKGAQIHPEVLGPELVERLSPYLRVTFSVEQQLPAGKHPRGRRH
ARGPIKVLGVSKDLKALQRKFAAQAEASARQMVKKQADQAGEQGKLVSQANLLHKAGATT
ESRATMLWRGALDALRLPAERISSRWLGTEALMLASAPYKSTKDLVEDLQLATVKRLMPN
VDRLSDDEALANAVLDVREVYEDTVYQVAHDVIAVLKAYAEVDKATGGKADLPMLSVLQS
IRDHIATLVYPGFIGRTPPDALKSLSRYLRADLSRLNKAKTDKNRDVKWAWQADEARQVV
DKALARAKAEPAGPKHEALMKQAEQARWMLEEFYVSLWAQELGTKGPASLNRIKKALA
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atgaaatatgagtatcccgcagaacttcccgtatctgccgcgcgtgatgagatagccagc
gcggtcaaacgttcccaagtcgttattgtgtccggccagaccggttcgggcaaaaccaca
cagctgccgaaaatcctgcttgagcttggccgtggcacgcacggcaagcagatcgtgcac
acccagcctcgccgtatcgccgcacgcacggtggccgaacgtatcgcctcggagatgggc
gtgaagctcggtgacgaggtcggctatcaggtgcgtttcaccgacgaaagctcgcccagc
acacgattgagggtcgtgaccgacggtattctgctcgcccagatccagcgcgatccgaaa
ctcacccgatacgatacgatcatcatcgacgaggcgcatgagcgcagtcttaacatcgac
tttctgctcggctatctgacggcactgctgcctcagcgccgcgatctgaagctcatcatt
acctccgcgaccatcgattcggtcaagttccaggagcatttcgagcacgccttgcatgag
aaggtgccggtaatcgaggtttccggccgcaccttccccgtgcaggtggtctacgagccg
cttggcaccgcgcccgcgttgatgcgcgaagtgccgggattcgcggtgggcgcccgcccc
ggcgacgccgattacgacgagctggccagcgccatcgcggaatccgattccgaccggccc
cgcggccggtccggtgcctcctatgccgatgacggtatcaccgatatgcctaccgccgtg
gctcgagcctgcgccgagctggtgattcactcctcccacgagcgcggtccccgcgatatt
ctggtcttcgcctccggcgagcgcgacatccacgagttcgaggccgcactgcggcatcat
tacggcccgcgcgccgacgacatgcgccggccggatgccatcgagatcatgccgctgttc
gcgcgactgtccgccgccgaccagcataaggtgtttgaatcgcaccttcaccagcgcatc
gtcattgccaccaatgtggctgagacctcgctgaccgtgcccggtatccggtatgtggtg
gaccccggttccgcccgtatctcccggtattcgaagaccgcaaaggttcagcgtctgccg
atcgagccgatcagccaggccagtgccgaccagaggtccggccgatgcggccgcgtggcc
gacggtatcgcgatccgcctgtattcgcgtgaggattacgagacccgaccgcgcttcacc
gagccggaaatcctgcgtacctcgctgggtgccgtggtactccacatgctgtcggtgggc
gtggcccgcacggccgaggacgtcacgaacttcgggttcatcgatccgccggatatgaag
gccgtgtcggacggtttcaatgagctcaccgagctcaaggccatcggccgcaagcgcggc
gaggtgacgctcacccataccggccgtcagctggcgcgcatccccatcgacgtgcgtctg
ggacgtatggttatcgaggccgcgaaaaccggttcgccgaatcttctggcccaggtgctc
gtggtcgtggcgttcctgagcttgcaggacccacgtgaacgcccggacgacaagcgtgag
gatgccgaccgcatccacaaccggtatgcggatgagacttccgacttcctgacggccctg
aatatctgggaccgcgtgttccaggcggacggcgacccgagcaacaacgcgctgcgccgt
atctgcaaaaccgagtatttcagctggctgaggatgcgccagtggaaagatctcgtctcc
cagctacgccagatgtgcaaggagctgaagttcaaggtcggcgacccgctgcccgcctcc
cgcccaggcttggagatccgccagctgccgttgaatcagcaggccgcgcattcgctgtgc
tgcgcgtgggatgcggacggcatccacaagtcgatgctcgccggattgctgtcgatgatg
ggcatgcaggtggtgcgcgagcccaaggcctccgatttcgcggggctgaccggttcggcg
cgcgcccgtgcgatgaaacgcgcccagaagcagtcgaagaacgattatcagggcgcacgc
ggcacccgtttcgccctgttccccgcttccgccgtggccaagaagaccccgtcatgggtg
atgagcaccgaactggtggaaacctctcgcctgtgggcccgctattcggcggccatcgac
cccgcgtgggccgaaccgttggccggccaattgacccgcaccacgtatgcggagccgcac
tggtcgggttcgcgtggctcggctgtggccaccgcgcgcgtgctgctgtatggtctgccg
atcgtacaggaccgtgccgtgcagtggggacgcatcaatccacttgaggcgcgcgacttc
ctgattcgccagggtctggtcgagggcgatattcagcagcgtttcagttacgacgacttc
gtgggcaaaaaccgcgacattctcgaggatgccgccgatgatgcgagccgcacccgccag
ctggcggataccgtgtccgacgaggatctgttcgacttctacaacgcggtcattcccaac
gatgtgaccagcgtgtccgatctggcgaaatggtggaagtccgagcatgaccgtcagccg
aatctgcttgatttcgacccggccaaggtggagcgtctggcatccagcgattcggtgagt
ctggacgattaccccgaccattggcatacgaccggatcggacggccaacccatcgacctg
cgtctgagctacgtgtacgatccggccgacccggccgacggcgtcaccgtgcatgtgccg
ttgaaggcgctctcgcgtatcacgcccgaccagttcacatggaatgtgccgggtctgttg
gatgagctgatcctgtcgatgatcaaggcgctacccaagcagctgcgcgtccagttcgtg
ccagccccggatgccgcgcgtgcgattcgtgactggatcgacgagcattacccggatctg
ccgggctcgggctcgcagcagaagccgaatctgccgccggtggatgaggatggcacgacc
gttggctggcccgatctggcacatgtgttcaccaaggcggccatcgccaccaagggtgcg
cagattcatcccgaagtgttggggccggaactggtcgagcgtctttccccgtatctcagg
gtcacgttctcggtggagcagcaactgccggccggcaagcaccctcgtggacgccggcat
gcgcgcggccccatcaaggtgctgggtgtgtccaaggatctgaaggcgctgcaacgcaag
ttcgccgcgcaggcggaggcgtcggcccgtcaaatggtcaagaagcaggccgatcaggct
ggagaacagggcaagctggtcagtcaggcgaacctgttgcataaggcgggtgccaccacc
gagtcccgggccacgatgctctggcgtggcgcattggatgcgctgcggttgccggccgaa
cgcatttcgtcgcgctggctgggtaccgaggcgttgatgctggcttctgctccgtacaag
tccaccaaggatctggtcgaagacctgcagctggccacggtcaaacggctgatgccgaat
gtcgacaggctctcggacgatgaggcgttggccaatgcggtgctcgatgtgcgcgaagtg
tacgaggacaccgtctatcaggtggcgcatgacgtgatcgccgtgctcaaggcttatgcc
gaagtcgacaaggccactggcggcaaggctgatctgccgatgctttcggtgttgcagtcg
attcgcgaccatatcgccacgctcgtctaccccggattcatcgggcgcactcccccggat
gcgctgaagtcgttgagccgatatttgagagccgatctgagccgactcaataaggcgaaa
accgataagaaccgtgacgtcaagtgggcttggcaggccgacgaggcccgtcaggtggta
gataaggcgttggcccgtgccaaggcggagccggccggcccgaagcatgaggcattgatg
aagcaggccgaacaggcccgttggatgcttgaagagttctacgtgtccctatgggcgcag
gagcttggcaccaaggggccggcttcgctcaaccgtatcaagaaagcgctggcgtga
DBGET
integrated database retrieval system
