KEGG   Bifidobacterium longum DJO10A: BLD_0301
Entry
BLD_0301          CDS       T00707                                 
Symbol
lhr
Name
(GenBank) Lhr-like helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
blj  Bifidobacterium longum DJO10A
Brite
KEGG Orthology (KO) [BR:blj00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:blj03400]
    BLD_0301 (lhr)
Enzymes [BR:blj01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     BLD_0301 (lhr)
    5.6.2.6  RNA 3'-5' helicase
     BLD_0301 (lhr)
DNA repair and recombination proteins [BR:blj03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    BLD_0301 (lhr)
SSDB
Motif
Pfam: DEAD_assoc WH_Lhr WH4_Lhr DEAD WH3_Lhr Helicase_C ResIII DUF6406 Cas3-like_C_2 PhoH
Other DBs
NCBI-ProteinID: ACD97747
UniProt: B3DRA3
LinkDB
Position
374485..379218
AA seq 1577 aa
MYESLSLFSEPTKMWFEHAFGQPTEAQAQAWPAIHSGRNVLVIAPTGSGKTLAAFLSAID
RLMTVPRTRRAGVRVLYISPLKALAADVAKNLEQPLEGIAAQCEAQGLPVPKIAVATRSG
DTTAQERRRIASHPPDILVTTPESLYLLLTSKAGRILGTVDTVIVDEIHAVAGTKRGAHL
AVSLERLENLVTESRKRDAIDADADEGGDAAVDAGRGDRHMQRIGLSATVNPPEKAARFL
GGGQPVTIVNPGGRPAMDLRMIEPLENMRDLQSVNAKQRVGGVDAERSAPHISGVTPAMQ
RLAERRGIVPVDDRDVSSTSGDDSDASDAFDSSALVGAAGDRTSGSIWPVVERSILDEIL
AHRTTLVFVNSRGVAEKLTARLNDLYAQTRHGTNPDTVRDLGSPEGREGFSTHYDAVVGS
TTMLVGSHEGDDVIAMAHHGSVSKDRRKMIEERLKRGELRCVVATSSLELGIDMGSVDLV
IQVDTPLSVSSGLQRVGRADHQVGGVSHALFYPLTRQQIVTGAASLEAMIAGDIEPLAVP
RNPLDILAQQTVAAAAMHDLNADDWYATVRRAAPFAELPRDMFDAVIGMMSGEYNSEEFS
AFRPRLVWNRDNGLISARPGSQKVAVTSGGTIPDRGLYTVVLPEADAGKGQRRVGELDEE
MVYESRVGDVITLGTSTWQIQEITRDRVVVTPAPGRTARLPFWHGEGAGRDYGFSRTIAR
FTREIAAGLDVKRTEGRSAAEGPAVPTFIPTILTRLHHDGLDANAITNLARLLSEQQAAT
GAVPSDQTLIVERTRDEDGGWRIVLLSPFGRRVHEPWSMAISRRLRQRYGFDGQVYAADD
GIVIQLPDGDGHIPAQDLFLFDPEDLKADVERQVGESVLFAARFRECAARSLFMPRSDPG
RRVPLWQQRLRAAQLLQSARMAKNFPLLLETARECLQDVYDMPALNEVMTGLQAGTITVK
DVETESPSPFAENILFGFVGVVMYQYDQPQAERSAQLLSLDPHVLERLLGATDMAQVLNP
DVIREVEQELGEHTFWNELADDDVTGRVTRYAKTHGPFTADQLIADLHLDATDAVHTLDV
LAAKGELLQGHFVDDDEQGQQWLHKDVFRRIRSRSLAKARKAVKPVESEAFQMFLIDRQG
IGPVGGERYEGADGLMRVIEQLEGISLPTALWESAVFPARVRDYQPALLDELLTSGDVVW
VGSKTGGTSAMDPGEVAFYPADSILFSGVEHGTTSNASDATMPEAILTALDSGGAFHARQ
LMDAAKRAWNETAEPDINPNTGEIIPQEWSEQQFKDALWSLVWQGKVTNSSFAPVRALTA
GAASPRKSTTSRRRGRVAPIRRATTDMTLGGLWSAVIGQAEAEDTDQTERALALVETLLD
RYGVIAQPVIDKENIPGGYSALYPVLNRMEEHGRLVRGMFVRGFGAAQFAERDTVDALRH
PSEHRGQSVVALSVLDPANLSGSAIAWPDAPAGAGKPARRIGATVVLNAQGALLYAAAKA
KHLTAFDQSVGHEAAVNDSDEQMRKAATELAYALKRNGTGSVTFSDINGEPLNARHPFAR
ILHQSGFTPVPQGMRLY
NT seq 4734 nt   +upstreamnt  +downstreamnt
atgtacgaaagcctgagcctgttttccgaacccaccaagatgtggttcgagcatgccttc
ggtcagccgaccgaggcacaggctcaggcatggccggcaatccattccggtcgcaatgtc
ttggtcatcgcccctaccggttccggtaaaacattggccgcgtttctctcagccatcgac
cgattgatgaccgtgccacgcacgcggcgtgccggtgtgcgtgtgctgtatatctcgccg
ttaaaggcgctcgcggccgatgtggccaagaacctagaacagcctttggagggcattgct
gcacaatgcgaggcgcaagggctgcccgtgccgaagatcgcggtcgccactcgttcaggc
gacaccaccgcacaggagcggcgacgcatagcctcccatccaccggatatcctcgttacc
acgccagaatcgttgtatttgttgctcacttcgaaggcagggcggattctcggcactgtc
gatacggtgatcgtcgatgagattcatgcagtggcgggcaccaagcgcggcgcacatttg
gcggtaagtctggaacggctggagaaccttgtcacagaatcgcgcaagcgagatgcaatc
gatgcagatgctgatgagggcggtgatgccgccgtcgatgctggccgtggcgatcgtcat
atgcagcgcattggtctatccgctacggtgaatccgcctgaaaaggcggcgcgattcctg
ggcggcgggcaaccggttaccatcgtgaatcccggtgggcggcctgcaatggatttgcgc
atgattgagccgttggaaaacatgcgtgatttgcagtccgtgaatgccaagcagcgtgtc
ggtggcgtggatgctgaacggtccgctccgcatatcagtggtgtcacgccggccatgcag
cgacttgctgaacgcaggggcattgtgccggtggatgatagagatgtttcttccacttct
ggggacgattctgatgcgagtgatgcgttcgattcctccgcgttggttggagcggcgggc
gaccgtacctccggttccatttggcccgtggtggaacgcagtattttggatgagattctc
gcgcaccgcactacattggtgttcgttaattcgcgtggtgtggctgagaaactcactgcg
cgcttgaacgatctgtatgcgcagacccggcatggcaccaatcccgacactgtgcgggat
ctgggctctccggaaggccgcgaagggttctccacgcattacgatgctgtggtcggctcc
accaccatgcttgtcggctcacatgagggcgatgatgtcatcgccatggctcatcatggg
tcggtttccaaagaccgtcgcaaaatgattgaggaacggcttaaacgtggtgaattgcgt
tgcgtggtggccacctccagtttggagctcggcattgatatgggctcggtcgacttggtg
attcaagtcgatacgccgttgtcggtctcctccggattgcagcgtgtaggccgtgccgat
catcaggtcggtggcgtctctcacgcattgttctacccgctcacccgtcagcagattgtc
actggggccgcaagtctggaagccatgattgccggcgatatagaaccattggccgtgccg
cgcaatccgctcgatattcttgcccagcagaccgtggccgctgccgcgatgcacgatttg
aacgctgatgactggtatgccacagtgcgtcgtgctgcgccgtttgccgaactgccacgt
gacatgttcgatgcggtaatcggcatgatgtccggcgaatacaacagcgaggaattctcg
gccttccggccgcgactggtatggaatcgggataatggcctgatttccgcccgtcccggt
tcgcagaaagtggccgttacctctggcggtacgattcccgatcgagggctgtacaccgtg
gtcctgcctgaggcggacgccggcaaaggccagcgtcgcgtcggcgagttggatgaggag
atggtctacgaatcgcgcgtgggcgatgtcattacgctcggcacctccacatggcagatt
caggaaatcacccgtgatcgtgtggtcgtgactccggctccgggccgcaccgcccgcctg
ccgttctggcacggtgaaggcgctggccgtgactacggtttcagccgtaccatagcccgc
ttcacccgagaaatcgccgccggattagacgtgaagcggactgaggggaggtctgccgca
gaaggtccagctgtcccaaccttcatcccaacaatcctcacccgtctccaccacgatggc
ctagatgccaacgccatcaccaacttggcccgcctactctccgagcaacaagccgccact
ggtgcagtccccagcgaccaaacccttatcgtggagcgcacacgcgatgaagacggcgga
tggcgcatcgtgctgttaagccccttcggccgccgcgttcacgaaccgtggtccatggcc
atcagccgcagactgcgccaacgctacggtttcgacgggcaggtatatgccgccgatgac
ggtatcgtcattcagctaccggacggtgacggacatattcctgctcaagacctgttcctt
ttcgacccagaagacctcaaagcagatgtagagcgtcaagtgggcgagtccgtgctattt
gccgcacgattccgcgaatgcgccgcccgatcactgttcatgcctcgttccgatccaggc
cgtcgcgtacccctatggcagcagcgactgcgcgccgcacagctcctgcaatccgcacgt
atggccaagaactttccgctgctgctggaaaccgcgcgcgaatgtttgcaagacgtatac
gacatgcccgccctgaacgaggtgatgaccggattgcaagccggcaccattaccgtgaag
gacgtggaaaccgagtcgccatcgcctttcgccgagaacattctctttggcttcgtcggc
gtggtgatgtaccagtatgaccaacctcaggccgagcgtagcgcgcaactgctgtctctc
gatccgcacgtgctcgaacgcttgctcggcgccaccgatatggcacaagtgctcaacccg
gacgtgattcgcgaagtcgaacaggaactgggggagcacactttctggaatgagcttgcc
gacgatgatgtgactggtcgcgtgacccgttacgccaaaacccatggtcctttcaccgcc
gatcagctcatagccgatctacacctcgatgctacggatgccgtgcacactctggatgtg
ctggctgccaaaggcgagttgctgcaaggccactttgtagatgatgacgagcaaggccaa
cagtggctccataaggacgtattccgccgtattcggtctcgctcattggccaaggcgcgt
aaagcagtcaagccagtagaatcagaggcgttccagatgtttcttatcgaccgacaaggt
atcgggccggtcggcggcgaacgatatgaaggtgctgacgggctcatgcgcgttatcgag
cagctggagggcatatcactgcccactgcactctgggagtcggcagtattccccgcacga
gtacgagactaccaacctgcattgctggatgagttgctgaccagcggcgatgtggtctgg
gtcggctcaaaaaccgggggaaccagtgcgatggaccccggtgaggttgctttctatccg
gcggattcaatattgttcagcggtgtggaacatggtacgacatcgaacgcctcagacgcc
accatgccggaagcgattctgaccgcactggactcagggggagcgttccatgcccgtcaa
ctgatggatgccgccaaacgtgcgtggaatgagaccgcggagccggacatcaatccaaac
accggcgaaatcattccgcaagagtggagcgaacagcagttcaaggatgccttgtggagc
ttggtctggcaaggtaaggtcaccaattccagcttcgcgccggtgcgtgcattaaccgca
ggcgcagcaagcccgcgtaaatccactacatcacgtcgtcgtgggcgtgtcgctccgatt
cgccgagccactacggatatgacgttaggaggtttgtggtccgccgtaatcgggcaagct
gaagccgaagacaccgaccagaccgaacgggcactcgcactggtcgagacgttgctggac
aggtatggcgtcatcgcgcagccggtgattgacaaggaaaatatcccgggtggctactca
gcgttgtatccggtattgaatcgcatggaggagcatggtcgactggtacgaggcatgttc
gtccgtggtttcggcgcggcccaatttgccgagcgcgacaccgtggatgcgttgcgtcat
ccgtcagagcatcgcggccagtccgtggtggcattgagtgtgctcgaccccgcaaatctc
agtggctccgccatcgcgtggccggacgcgcctgccggtgcgggtaaaccggcacgccgt
atcggagccacggtcgtgctcaatgcgcaaggcgcgctactatacgcggccgccaaagcc
aagcacctgacagcgttcgatcaatcggtcggccatgaagccgctgtcaatgattccgac
gaacaaatgcgcaaggccgccacagaactggcctacgccctcaaacgcaatggcaccggc
tccgtgacattcagcgacatcaatggcgaacccctcaacgcccgtcaccccttcgcccgc
atcctccaccagtccggcttcacccccgttccccaaggcatgcggctgtactga

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