Bifidobacterium longum subsp. longum KACC 91563: BLNIAS_02177
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Entry
BLNIAS_02177 CDS
T01845
Symbol
uvrD3
Name
(GenBank) superfamily I DNA and RNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
blk
Bifidobacterium longum subsp. longum KACC 91563
Pathway
blk03420
Nucleotide excision repair
blk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
blk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BLNIAS_02177 (uvrD3)
03430 Mismatch repair
BLNIAS_02177 (uvrD3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
blk03400
]
BLNIAS_02177 (uvrD3)
Enzymes [BR:
blk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BLNIAS_02177 (uvrD3)
DNA repair and recombination proteins [BR:
blk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BLNIAS_02177 (uvrD3)
MMR (mismatch excision repair)
Other MMR factors
BLNIAS_02177 (uvrD3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
DEAD
XdhC_CoxI
Motif
Other DBs
NCBI-ProteinID:
AEI98019
LinkDB
All DBs
Position
complement(1709933..1713964)
Genome browser
AA seq
1343 aa
AA seq
DB search
MSTFTPSAEQAAIIDAPVDADVLVVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTR
KAAGELLERVSAAVAGDMAGSTTATVSDRAFLKPAIFTYDAFFQTIVRQYGLLVGFDQNT
QPLSAAGALQLATEVIDSHMDLAFSEDFGAFSSLANRVLALSDAIGSAMIGAGCTSFDDA
INRVRQWDSAFINRLQQAVADEPMPEDEPKIPKIKRLKKDTDASWQAKLDDRAEHLHARC
TYHCGALLETTRKRDILLQLVEAYAQAKRERNMAEFSDFTIAAYQLIERFPSIGECTRRR
YSHVLLDEYQDTSTTQAALLAALFHVDASQRSAVNAVGDPFQSIYAWRGASPGAFRMFQQ
DFHLSAGYKPFPLSVTRRNSRIVLEAANNLTLPLRSNPSRPSSSLMREVDVSSLDPMPDA
PEGTLGVLGFATAGQEIDAVVRFCKTAIARHRSAAEQQEQMPGEQKAPVAVLFRSKSHMP
EYQAALEQAGLTTFVVGYSALLERPEIRDLMALLHVAADHTDTGSLMRLLATPRFTMSAA
DLTMLARFAEEQNTEQRFQALVQAGLAQPDTPANEWAAVVREYRDQVANAVFLPDVLLRG
DLIKLLERLSAHGRNAITRAAVMLRQVHDAVGRPLGDVIRAGIEALDLDIDTVLAGVLHN
PQHRANPALAHMPMDAIVDLVDTYTQEIAAEQTPSLHGFITWVDHLASVEDEAASLPDAP
VDVELMTVHQSKGLEWDAVAVVGLTAVGFPSNQGDHLKIVLDEHHTGGTEQGHWTAPEYH
ETADSWLTNPTAVPVPMRADAGILPRFPHDADVEADPIASLAALDDVELIDDEVFGSMRE
FGDGVEEVDASGWYLTQAEEYGRRLHADERRLMYVALTRAREDALMTYCAYTGESGRDPS
VVPKGSRAAQPSNFWLEVHDALQAREHAISAQDCVERLQAANAGKPMLISAQGEAIATPE
GFFIGEHAAAYGDAVVGEAWQTPITQTDAAVELPWPATLSDAVHEQLSRGIDVIAADSSS
LEQHQDAGPLLQRAQLLVDDADLMADAASGQSLDEAVKAKAQRVLAAGRQNVTSLQARVG
GMNEREERLYWRSIIRPIPRISSPAAEAGTQFHAWAEQFINAGKPDEAVLAYEAESSMPH
TGQDAGFVSREAMLADLAERERQCRKPSTRQPAVPQPTAQQSASAVSAASATSISSDNAT
ESKLVAWQRRLAESSWAKRIPAWTERAIVVDVPGVGLVNGKLDAVFIGGLDPSSTTARFT
VVDWKTGRRPTKPDDITRKLAQLDMYRLLLAAVEGVELDSIDATLYYVSEPDEGLRELHA
RAKTKQEILTELSSGIPEQSDND
NT seq
4032 nt
NT seq
+upstream
nt +downstream
nt
atgagcacgttcactcccagtgcggaacaggccgccatcatcgatgcgccagtcgatgct
gacgtattggtggttgccggtgccggttccggcaaaacctttacgatgacccaacgcatc
atcgcgcttatcaatcgaggtgtggcacctgaacgcatccttggcctgaccttcacacgc
aaggccgcaggcgaactgctggaacgcgtctccgccgcagtggccggtgatatggcgggc
tctacgaccgccacggtgtctgatcgggcattcctcaagccggccattttcacgtatgac
gccttcttccagaccatcgtgcgccaatatggactgcttgtcggattcgatcagaacacg
caaccattgagcgcagccggagcgcttcaactggccaccgaagtcatcgacagtcacatg
gatctggcgttcagtgaggattttggcgccttctccagtttggcgaaccgtgttctggcg
ttgtcggatgccattggcagtgccatgatcggtgccggctgcaccagcttcgatgatgcg
atcaatcgagtacggcaatgggattcggcattcatcaatcgattgcaacaagccgttgca
gacgaacccatgcccgaggacgagccgaaaatccccaagatcaaacgactgaagaaagat
accgacgccagctggcaagccaagctcgatgaccgtgccgaacatttgcacgcccgctgc
acctatcattgcggtgcgctgctggagaccacacgcaaacgcgatattctgctccagctg
gtggaggcctatgcccaagccaagcgggaacgcaatatggccgaattctccgacttcacc
attgccgcgtatcagcttatcgagcgcttcccctccatcggagagtgtacgcgccgcagg
tacagccacgtgctgctcgacgaatatcaggacacctccaccacgcaggccgctctgctg
gcagcactgttccacgtggatgcgtcacagaggtccgccgtcaacgcggtgggtgatccg
ttccagtcgatttacgcatggcgtggtgccagccctggtgcattccgtatgttccagcaa
gatttccacctgtctgccggatacaagccattcccgctgtccgtcaccaggcgaaacagc
cgtatagtgctcgaagccgccaataatctcacgctgccgttgcgctccaatccgtcgcgt
ccttccagctcattgatgcgtgaggtcgatgtctcatcgctcgaccccatgcctgatgcc
cccgaaggaacattgggagtactgggcttcgccacggccgggcaggagatcgacgccgta
gtgcgtttctgcaagacggccatcgcacggcaccgttccgcagccgaacaacaggaacag
atgccgggcgaacagaaagcgccggtcgccgtgctgtttcggtccaaatcacatatgccc
gaatatcaggcggcattggaacaggccggattgaccacattcgtggtcggctattccgcg
ctgttggaacgtccggaaatccgcgatctgatggcgttgctgcacgtggccgccgaccac
accgatacgggatcgctgatgcgcttgctggccacgccacgattcaccatgtccgcagcg
gatttgaccatgttggcccgttttgctgaagaacagaacacggaacaacgcttccaagca
ttggtgcaggccggccttgcccaaccggatacaccagcgaatgaatgggcggctgtggtg
cgtgagtaccgcgatcaggtggccaatgcggtattcctgccagacgtattgctacgcggc
gacctgataaaactgcttgaacggttgagcgcacacgggcgcaacgccataacccgggcc
gcggtgatgctccgtcaggtgcatgatgccgtcgggcggccactgggcgacgtgattcgc
gccggcatagaagcgttggatcttgacatcgacaccgtattggccggtgtgctgcataat
ccgcagcaccgcgccaatcccgctttggcgcatatgcctatggatgcgattgtggatttg
gtggatacgtacacgcaagagattgccgctgagcaaactccctcgttgcatgggttcatc
acatgggtggatcatctggcttcggtggaggatgaagccgccagtctccctgacgctccg
gtggatgtggaactgatgaccgtacaccagtccaaagggttggaatgggatgccgttgcg
gtagtggggcttaccgccgtcggattccccagcaatcagggcgaccatctcaagatcgtg
ctggacgagcaccatacgggaggcaccgagcaaggtcactggaccgcacccgaatatcat
gagaccgccgactcctggctcaccaaccccaccgccgtacccgtgcctatgcgtgccgat
gccggcattctgccgcgattcccccatgatgccgatgtggaagccgaccccatcgcatcg
ttggcggctttggatgatgtggagcttattgatgatgaagtgttcggctccatgcgcgaa
ttcggcgatggcgtggaagaagtggatgcatccggctggtatttgacgcaggcggaggaa
tatgggcgccggctgcatgccgacgaacgtcgattgatgtatgtggcgcttacccgtgcg
cgagaagatgccctgatgacctattgcgcctatacgggcgaatccgggcgggacccgtca
gtggtgcccaaaggctctcgcgccgctcagccatccaatttctggcttgaagtgcatgac
gcgctccaagcccgtgaacatgcgatatcggctcaggactgtgtggaacggctgcaagcc
gccaatgccgggaagcccatgctgatctcggcgcaaggcgaagcgattgccactcccgaa
gggttctttatcggagagcatgccgcggcatacggtgacgccgtggtgggggaggcatgg
cagacgccgattacgcagacggatgccgctgtcgaattgccgtggccggctaccctcagc
gacgcagtgcatgaacagctgtcacgtggcatcgatgttatcgccgcagattcctcgtca
cttgagcagcaccaagacgccggtccactgctgcaacgggcgcaattgctggtggacgac
gccgatttgatggccgatgccgccagcggccagtcgcttgatgaggcagtcaaagccaag
gcgcaacgcgttctggctgcaggacgccagaacgtgacaagcctgcaagcccgcgtaggt
ggcatgaacgaacgggaggagcgcctctactggcgtagcattatccgcccgattccgcgc
atatcgtctccggcggccgaggccggcacgcagttccatgcgtgggctgagcaattcatc
aatgccggtaagccggatgaagcggtactggcatatgaagccgaatcaagtatgccgcat
acaggtcaggatgcgggattcgtttcccgggaagccatgttggccgatttggccgaacgg
gagcggcaatgccgcaagccatccacacggcagcccgctgtcccacagcccacggctcaa
caatccgcatccgccgtatccgccgcctccgccacttccataagtagcgacaatgccacc
gagtccaagctggtggcgtggcagcgcagactggccgaatcatcgtgggccaagcgcatc
ccggcgtggacggagcgtgccatcgtcgtggacgtgccgggcgtgggcctggtcaatggc
aaactcgatgcggtattcatcggtggacttgacccgtccagcaccaccgcacgctttacc
gtggtcgactggaaaaccggtcgtcggcccaccaagccagacgacatcacccgcaaactc
gcccagctcgacatgtaccgactgctgctggcagcggtcgaaggtgtggaattggacagt
atcgacgccactctctactatgtcagtgagcccgacgagggcttgcgcgagcttcacgcc
cgcgcgaaaaccaaacaggaaatccttaccgagttgagctccggcattcccgaacaatct
gacaacgactga
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