Bifidobacterium longum subsp. longum JDM301: BLJ_0782
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Entry
BLJ_0782 CDS
T01240
Name
(GenBank) 3'-5' exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
bll
Bifidobacterium longum subsp. longum JDM301
Brite
KEGG Orthology (KO) [BR:
bll00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bll03016
]
BLJ_0782
Enzymes [BR:
bll01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
BLJ_0782
Transfer RNA biogenesis [BR:
bll03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
BLJ_0782
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Motif
Other DBs
NCBI-ProteinID:
ADH00249
UniProt:
D6ZTP3
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All DBs
Position
948437..949738
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AA seq
433 aa
AA seq
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MSDVRDTEPRLLKEPRGGVPDVTSSLDGYHRACDALAEATGSLAADAERASGFRYGHEDW
LIQFKREGAGIALLDPVALTRAGADWNEFNDAVGDATWILHDSLMDLPGFAEIGLKPKAL
FDTEIAARLLGLHRFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDWRNYAALDVEVLIE
LETLMRRDLKAAGKDEWAAEEFSHALVAGLAPRKPHPIPWLRISRITQLSRDPRGLAIAK
SLWEERDRLARRYDIAPSLLLTDSSIIEAATNKPHNAAQFRALRSLNERVRIHTGTEQDK
MFERYAPIQRTVKPKVWKQAIDRAMALKPTQWPTMPAPEQDENGVVNAPRSMRLWQQRHP
ERYDRLQRVRRVINRIAEDTRTPAEMIIKPQILRNLCWVEDPVEVDVETFLIEQGARNWQ
VKLIAPSVSGVIM
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
ttgagtgacgtccgtgacaccgaaccccgactgctgaaagagcctcgcgggggagtgccc
gatgtcacttcgtcgctggatggctatcatcgtgcctgcgatgcgctggccgaggcgacg
ggctcgctggccgccgacgccgaacgggcgtccggattccgctatggacatgaggattgg
ctgattcagttcaaacgtgaaggtgcgggcatcgccttgcttgatcccgtcgccctgaca
cgggccggagctgactggaatgaattcaatgacgccgtgggcgatgctacatggattctg
catgattctctgatggacttgcccggattcgccgaaatcggactcaaacccaaggccttg
ttcgacacggaaatagcggcgcgattgctcggcctgcaccgcttcggtctggccgccgtc
accgaacactacctcggcatcacgctggccaaagagcattccgccgccgattggtcctac
cgtccgctgccgcgcgactggcgcaactatgcggcgctcgacgtggaggtgcttatcgaa
ctcgaaaccttgatgcgtcgtgacctgaaagccgcaggcaaggacgagtgggccgctgaa
gagttttctcacgctttggtcgcgggccttgccccgcgcaaacctcatccgattccttgg
ctgcgtatctcgcgcatcacccagctgagtcgtgatccgaggggcttggccatcgccaaa
tccctatgggaggagcgcgaccggctcgcccggcgatacgacatcgctcccagcctgtta
ttgaccgattcgtcaatcatcgaggccgcgaccaacaagccgcacaatgccgcccaattc
cgcgcactccgatccctgaacgagcgtgtgcgcattcataccggcaccgagcaggacaaa
atgttcgagcggtacgcgccgattcagcgtacggtcaagccgaaggtctggaagcaggcc
atcgaccgcgccatggccctgaagcccacccaatggcctaccatgcccgcccccgaacag
gacgaaaacggtgtggtgaacgcgccccgatccatgcgactgtggcaacagcgccatccg
gagcgttatgaccgtctgcagcgggtacggcgtgtgatcaaccgcatcgccgaagacacc
cgcacgccggccgagatgatcatcaagccacagatcctacgcaacctgtgctgggtggaa
gacccggtggaagtggacgtcgagacgttcctgatcgagcagggcgcaagaaactggcag
gtgaaactcattgcaccgtccgtaagtggcgttatcatgtag
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