Bifidobacterium longum subsp. longum JDM301: BLJ_0856
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Entry
BLJ_0856 CDS
T01240
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
bll
Bifidobacterium longum subsp. longum JDM301
Pathway
bll03420
Nucleotide excision repair
bll03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bll00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BLJ_0856
03430 Mismatch repair
BLJ_0856
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bll03400
]
BLJ_0856
Enzymes [BR:
bll01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BLJ_0856
DNA repair and recombination proteins [BR:
bll03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BLJ_0856
MMR (mismatch excision repair)
Other MMR factors
BLJ_0856
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ADH00322
UniProt:
D6ZTW6
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All DBs
Position
1029898..1032591
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AA seq
897 aa
AA seq
DB search
MYDEPEVIARSAQELVGDLNPQQAEAVQYRGQALLIGAGAGSGKTRVLTRRIAWILSQFG
AWPSQILAITFTNKAAAEMRERLGSLIGPVAQRMWVSTFHSACVRILRRDGKSIGLKSGF
SIYDSADSERLVKIIATEFNLDIKRYTPRSILGRISDLKNNLTGWKENLAVHAPDFTPGQ
RGYQFGTVDDLEAIYAVIYAEYEHRLALANAVDFDDLIGRTVELLRTDPAVAEYYHHRFR
YILVDEYQDTNHAQYVLVRELAGVDTGEKAIPGAPNAGKSGPAWITVVGDSDQSIYAFRG
ADIRNIQDFEQDFPNAKTIMLEQNYRSTQTILDAANAVISNNEGRKPKKLWTALGKGEPI
VGYAADNAQQEAQWVATEIARLHAEEGISYSDMAIMYRANAQSRSLEEALINTNQPYQLV
GGTKFYERREIKDALAYLQALVNPDDDVNLRRILNVPKRGLGDRAEGVLLAYAREHGTSF
FYALMHLDEIEVPTRTATSLRAFRDLMGALSQFTHAHDSKPSEIVAEVLEKSGLRAELEK
SVDPQDASRLENLSQLQSTAAEFEQNTPDATLSAFLETTALVADSDQLPGEAEDSGKVTL
MTLHTAKGLEYPVVFLTGMEQGTFPHSRSMEDTTELQEERRLAYVGITRAKQRLYVTRAA
VRSQWGQAADMMPSQFLDEIPDSLIDWKRREAGVERMRANWETDGFADDLGGWDDDDFGG
ATFGGSSTFGSRGSSGSGSSYGSRSRYGSSYGSGSGSSSYGSRSGSSYGSRSSSYDSRSG
SSSYGSRSRSGSSYGSRSRSGSSSGSYGGTRGGKVTTRRTTPKSGSTGSAVPSSKLTKDN
GLNIADFAVGDMISHDQYGLGKVTDAQDKGRNSVITVDFGSAGVKRLMLRVAPIEKL
NT seq
2694 nt
NT seq
+upstream
nt +downstream
nt
gtgtacgacgagccggaagtcatcgcacgcagcgcgcaggaactcgtaggcgatctgaac
ccgcagcaggcggaagccgtgcaataccgcggtcaggcgctactgatcggtgccggtgcc
ggctccggcaaaacccgtgtgctgacccgccgcatcgcctggatcttgagccagttcggc
gcatggccgagccagattctggccatcaccttcaccaacaaggccgccgccgaaatgcgc
gaacgactcggctcgctgatcggcccggtggcccagcgcatgtgggtctccaccttccat
tccgcctgcgtgcgcattctgaggcgcgacggcaagtccatcgggctcaagtccggcttc
tccatttatgattccgccgactccgagcgactcgtcaaaatcatcgccaccgaattcaac
ctcgacatcaagcgctacactccacgctcgatcctcggccgtatctccgacctcaagaac
aatctgaccggttggaaggaaaacctcgccgttcacgcgcccgacttcacgcctggccag
cgcggctaccagttcggcacggtggacgaccttgaagccatctatgcggtgatctacgcc
gaatacgagcatcgcttggccctggccaacgccgtcgacttcgacgatctgatcggccgc
acggtcgagttgctgcgcaccgacccggccgtcgccgagtactaccatcaccgcttccgt
tacattctcgtcgacgagtatcaggacaccaaccacgcccagtacgtgcttgtgcgcgag
ctggccggcgtggacacgggggagaaggccatcccgggcgcgccgaacgccggcaagtcc
ggccccgcctggatcaccgtggtgggcgattccgaccagtccatctacgcgttccgtggc
gccgacatccgcaacatccaggacttcgagcaggacttcccgaacgccaagaccatcatg
ctcgaacagaactatcgttcgacgcagaccattctggacgcggccaacgcggtgatcagc
aacaacgagggccgcaagcccaagaaactgtggaccgcgctcggcaagggcgagccgatc
gtcggctacgcggcggacaacgcccagcaggaggcccagtgggtggccaccgaaatcgcg
cgcctgcacgccgaagagggcatctcctactccgacatggcgatcatgtaccgcgccaac
gcccaatcccgctcgctcgaagaggcgctgatcaacacgaatcagccgtatcagctcgtc
ggcggcaccaagttctacgaacgtcgcgaaatcaaggatgcgctggcctatttgcaggcg
ctcgtcaatccggacgacgatgtgaatctacgtcgtattctcaacgtgcccaagcgcggg
cttggcgaccgcgccgaaggcgtgctgctcgcctacgcgcgcgagcatggcaccagcttc
ttctacgcactcatgcacttggatgagatcgaggtgccgacccgcaccgccacctcgcta
cgagcattccgcgatctgatgggcgcgctctcgcagttcacgcacgcgcacgactccaag
cccagcgagatcgtggccgaagtattggagaagtcgggcttaagggccgaacttgagaaa
tccgtggatccgcaggacgcctcccgtctggagaacctctcccagctgcagtccaccgca
gccgaattcgaacagaacacgcctgacgccacgttgtccgcattcctggagaccaccgcg
ctcgtggccgactccgaccagctgcccggtgaggcggaggactccggcaaggtgacgctc
atgaccttgcacaccgccaagggcctcgaatacccggtggtgttcctgaccggcatggaa
cagggcaccttcccgcattcgcgttcgatggaagacaccactgaactgcaggaggaacgc
cgactcgcctatgtgggcatcacgcgtgccaagcagagactgtatgtcacgcgcgccgcc
gtccgctcccagtggggccaggccgccgatatgatgcccagccaattcctcgacgaaatt
ccggattcgctgattgattggaaacgccgtgaagccggcgtggagcgtatgcgcgccaac
tgggagaccgatggattcgccgacgatttgggcggctgggatgatgacgatttcggcggt
gccacgtttggcgggtcgtcgacgttcggctcgcgtggttcgtccggttcgggttcgtcc
tatgggtcgcggtcgcggtatgggtcgtcgtatggctcgggttccggctcctcgtcgtat
ggttcccgttcaggttcttcgtacggttcccgttcatcatcatatgattcccgctccggc
tcgtcctcctacgggtctcgctcccgttcggggtcgtcttacgggtcgcgttcccgttcc
ggttcttcatccggttcatatggcggcacccgtggcggcaaggtcaccacgcgccgcacc
acaccgaaatccggttcgaccggctctgccgtgcccagctcgaagctcaccaaggacaat
ggcctgaatatcgccgacttcgccgtgggcgacatgatcagccacgaccagtacggtctc
ggcaaggtcaccgacgcgcaagacaagggccgcaattcggtaatcaccgtggacttcggc
tccgccggcgtcaaacgcctcatgctccgcgtagcacctattgagaagttgtag
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