Bifidobacterium longum subsp. longum JDM301: BLJ_1829
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Entry
BLJ_1829 CDS
T01240
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bll
Bifidobacterium longum subsp. longum JDM301
Pathway
bll03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bll00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BLJ_1829
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bll03019
]
BLJ_1829
03009 Ribosome biogenesis [BR:
bll03009
]
BLJ_1829
Enzymes [BR:
bll01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BLJ_1829
Messenger RNA biogenesis [BR:
bll03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BLJ_1829
Ribosome biogenesis [BR:
bll03009
]
Prokaryotic type
rRNA processing factors
BLJ_1829
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RD3
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
ADH01252
UniProt:
D6ZWJ6
LinkDB
All DBs
Position
complement(2172800..2175955)
Genome browser
AA seq
1051 aa
AA seq
DB search
MQRAARSIVPTDNREGFVNDGTDNSTVSNADSAAAVNAAPAAASQPVEPVRRRRGGRRVV
RGTGAAGASLELQVQERTPLFEAPALPNASTAADSKSSDSGDSDESSDSKDSAERPTRRR
TRRVSTADDAAETPRRTRRTSAASSSDTDDDDETPHRPRRAASAVADLDSEDDRPRRSRR
TVSADDFDDDDAPRSRRRSVVDDDDYDEDRSVRRRSRSRQSDDDDYEDRPVRSRLRRAPM
DMDDDDEDRTVRRRSRRAVADTHEDTPDERLFDAVESLPSGHETVRRGKPMTSLLFQEPV
LPAAVDAHDTADTRDDDVDADERPSRRSRRSRSHDDDDAQPRSRRRDDRDDRGRASADRD
ASRDAASGDTNANHDDFDADDTSDSRRSRRSRRLNAQERRAAAEVEQIEEDLELDDIAYS
PIAEEEGDEESDVTRTRSRRRRRRGSRGETGANGEHDTAENDAEDTRSRRRDDRDDHDRD
RDEDDEEQTVTRRRRRRRGGKNGEGTDDQSQNSEQPLVRRSRKQQYIDEITDVEGSTRLE
AKKQRRRDNRRERSRQSQLMEQDFLARRENVDRLMVVREKEHHTQISVVEDNVLVEHYVS
DIQEVQTVGNIYLGRVQNVLPSMEAAFVDIGQSRNGVLYAGEVNWDAARLEGQPRRIELA
FKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERSRLKNI
VSKIAPKDMGVIIRTAAEGASEDAIVKDLESLVRQWERINAKREEFWHGKRPKLLQGEPD
VAIRVVRDIFNDDFSKLIVEGDKVYDRIEEYLDTMAPDLKDKLEKWDPAEHEGKDVFDKW
SIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGRFIGKGKSLEETVTRCNLEASE
EIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAEVTSLGLVQMT
RKRIGQGLVEAFSEECPTCKGRGFILHDQPTVSADYDDPYALRGGDPFVKTNKHGRGTAP
APEPAGSSADVKAKLAQIAAAAVAANNTAEE
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgcgccgcgaggagcattgtgcccactgacaaccgtgaaggtttcgtcaacgac
ggaaccgataattcaaccgtatccaatgccgattcggctgcagccgtgaacgctgcgcct
gccgccgcctcccagcccgtcgaacctgttcgccgtcgtcgtggcggccgccgcgtggtc
cgcggcaccggtgctgccggcgcctccctggaactgcaagtgcaggaacgcaccccgctg
ttcgaagcccccgcgcttcccaatgccagcaccgcggccgattccaagtcatccgattcc
ggcgattccgatgaatccagcgattccaaggattccgccgaacgtccaacccgccgccgt
acgcgccgcgtttccacggccgacgatgccgccgaaacgccgcgtcgcacccgtcgtacg
tccgccgcatcttccagcgataccgatgatgacgacgagactccgcaccgtccgcgccgc
gccgcttccgcagtggccgacttggatagcgaggatgatcgtccgcgccgttcgcgccgc
acggtcagtgccgatgatttcgatgacgatgacgccccgcgttcccgccgccgttcagtc
gtggacgatgacgattacgacgaggaccgttcggttcgccgccgctctcgctcccgccag
tccgacgatgatgactacgaggatcgcccggttcgctcccgcctccgccgtgcgcctatg
gatatggatgatgatgacgaagaccgtacggttcgccgtcgttctcgccgtgcagttgcg
gatacgcacgaggacaccccggatgagcgcctgttcgacgcggtcgaatccctgccctct
ggccacgagaccgtgcgccgtggcaagccgatgacgtccctgctgttccaggaaccggtg
ctgcccgccgccgtggatgcgcacgataccgctgacactcgtgatgacgatgttgacgcc
gacgaacgcccgtctcgtcgctcccgccgctcgcgcagccacgacgatgacgatgcccag
ccgcgcagccgtcgccgcgacgatcgcgacgaccgcggccgcgcctccgccgaccgtgac
gcttcccgtgacgccgcgtccggcgataccaacgccaatcacgacgatttcgacgccgac
gacacctcggactcccgccgttcgcgccgctcccgccgtctgaacgcccaggagcgccgt
gcagccgccgaagtcgagcagattgaggaagacctcgagctggacgatatcgcctactcg
ccgattgccgaggaggagggcgacgaggaatccgacgtcacccgcacccgttcgcgccgt
cgccgccgtcgtggctcacgcggcgaaaccggtgccaacggcgagcacgataccgccgag
aacgatgccgaggatacgcgttcccgccgtcgtgacgatcgcgatgatcatgaccgtgat
cgcgatgaggacgatgaggagcagaccgtcactcgccgtcgccgccgccgtcgtggcggc
aagaacggcgagggcaccgacgaccagagtcagaacagcgaacagccgctggtccgccgc
tcccgcaagcagcagtacatcgacgaaatcaccgatgtggaaggctccactcgtctcgag
gccaagaagcagcgccgccgtgacaaccgccgtgagcgcagccgccagagccagcttatg
gaacaggacttccttgcacgccgcgagaacgtggaccgcctgatggtggtgcgcgagaag
gaacaccacacccagatttccgtggtggaagacaatgttctggtcgagcattacgtctcc
gacattcaggaagtacagaccgtcggcaacatctatcttggccgcgtgcagaacgtgctg
cccagcatggaggccgcattcgtggatatcggccagtcccgcaacggtgtgctctacgcc
ggcgaggtcaactgggatgccgctcgtctcgaaggtcagccgcgccgcatcgagctggcg
ttcaagtccggcgacccggtgctcgtgcaggtcactaaggacccgatcggccacaagggt
gcccgcctgacctctcaggtcacgcttgccggccgcttcctggtgctcgtgccctccggt
ggcatgaccggcgtgagccgcaagctttcggagcgcgaacgcagccgtctgaagaacatc
gtctccaagatcgccccgaaagacatgggcgtgattatccgcaccgcggccgaaggcgca
tccgaagacgccatcgtcaaggatctcgaatcactggtccgccagtgggagcgcatcaac
gccaagcgcgaggaattctggcacggcaagcgcccgaaactcctgcagggcgagcccgac
gtggccatccgcgtggtgcgcgacatcttcaacgacgactttagcaagctcatcgtggaa
ggtgacaaggtctacgaccgtatcgaggaataccttgacaccatggcccccgacctgaag
gacaagctggagaagtgggacccggccgagcacgaaggcaaggacgtgttcgacaaatgg
tccatcgactcccagctgcgtaagggcatggaacgtcaggtctacctgccgtccggcggc
tcgattgtcatcgatcgcaccgaggccatgaccaccatcgacgtgaacaccggccgcttt
atcggcaagggcaagtccttggaagaaacggtgacgcgctgcaacctggaggcgtccgaa
gagatcgcccgccagctgcgcctgcgcgatatcggtggcatggtgatgatcgactatgtg
gatatggtcatgcccgccaaccgcgatctggtgctgcgccgcttggtcgaatgcctggca
cgcgaccgcaccaagcatcaggtggccgaagtcacctcgcttggtttggtgcagatgacc
cgcaagcgcatcggccagggtctggtcgaggcgttctccgaggaatgcccgacctgcaag
ggccgtggtttcatcctgcatgatcagccgaccgtttcggccgactacgacgatccctac
gcgcttcgcggtggcgacccgttcgtcaaaaccaacaagcacggtcgcggcaccgctccc
gctcccgaaccggctggttccagcgccgacgtcaaagccaaactggctcagattgccgcc
gctgccgtcgctgccaacaacacggcggaagagtaa
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