Bifidobacterium longum subsp. longum JCM 1217: BLLJ_0405
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Entry
BLLJ_0405 CDS
T01419
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
blm
Bifidobacterium longum subsp. longum JCM 1217
Pathway
blm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
blm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BLLJ_0405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
blm03021
]
BLLJ_0405
03400 DNA repair and recombination proteins [BR:
blm03400
]
BLLJ_0405
Enzymes [BR:
blm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BLLJ_0405
Transcription machinery [BR:
blm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BLLJ_0405
DNA repair and recombination proteins [BR:
blm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BLLJ_0405
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
IF-2
Motif
Other DBs
NCBI-ProteinID:
BAJ66074
LinkDB
All DBs
Position
509779..513342
Genome browser
AA seq
1187 aa
AA seq
DB search
MATESTTNTTTIIARADQHDIDLHKASDRVNFGSIKEPIDVPYLLGVQTDSFDWLIGNER
WKARVEEDEKNGTNTVAHTSGLDEVFNEISPIENFAQTMSLTFSDPYFEEPRHTVQECKE
KDYTYSAPLYVNAEFENGDTGEIKSQTVFMGDFPLQTPHGTFIIGGTERVIVSQLVRSPG
VYFDRQQDRTSDKEVFGAKIIPSRGAWLEFEIDKKDQPQVRVDRKRKQSAIVFLMAIGMT
KSEIAQAFKDYPLVLDALEKETLETQDEALVDLYRKIRPADTPTPEAGKNLLDSFYFNTK
RYDLARVGRYKINRKLGVEADFNDRSLHQEDIIATIKYLVALHDGAATFPGKRNGEDVDL
RVDVDDIDHFGNRRIRQVGELIQNQLRTGLSRMERVVRERMTTQDAEAITPQSLINIRPV
NATIKEFFGTSQLSQFMDQNNPLSGVTNKRRLSALGPGGLSRDRASMEVRDVHPSHFGRM
CPIESPEGPNIGLIGSLATFGRVNPFGFIETPYRKVVNGHVTDEVEYMTADRDLDHVIAQ
ANQELDENGNFVQKSALARVGEEEAVDVPVSSVDYMDVSPRQMVSLGASLIPFLEHDEGH
RALMGTNMQRQAVPLIESERPLVGTGSEWRAANDSGDVIKSEKDGVVTYVSADLIRVMND
DGTTSSYKLAKFQRSNQTTCYNQRPIVHDGERVEAGSVMADGPAIQNGDLALGKNLLIAF
MPWNGYNYEDAVIISQRLVQDDTLSSIHIEEYEIDARETKLGAEEITRDLPNVGEDAVAN
LDERGIIRIGAEVEAGDILVGKVTPKGETELTPEERLLRAIFGEKSREVRDTSLRVPHGE
TGTVIGVKEITREDAEEDGDELPNGVNQMIRVYIAQHRKITVGDKLSGRHGNKGCISRIL
PEEDMPFLADGTPVDIMLNPLGVPSRMNLGQVLELHLGWIAHSGWDISLDPNMEAEWKKL
IPSGAEKAEPNTPVATPVFDGVKPEVLKGLLSTTLPNRDGDRLVGPDGKATLFDGRTGEP
YTKPISVGYMYMLKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEA
YGAAYTLHEMMTTKSDDVDGRVRVYGAIVKGDNLPPAGIPESFKVLLKEMQSLSLNVEVL
NAEGVAIDMKDEDDDPASSADDLGFNIGARPDAAAKEDQKAEEPEYQ
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
ttggctactgagtctacgacgaacaccaccaccatcatcgcacgcgccgaccagcatgat
attgacctgcacaaggcgtcggatcgcgtgaacttcggttccatcaaggaacccatcgat
gtgccctacctgctgggcgtgcagaccgacagcttcgattggctgatcggcaacgaacgc
tggaaggcgcgcgtcgaggaggacgaaaagaacggcactaacaccgtggcccacacctcc
ggcctcgatgaggtcttcaacgagatctctccgatcgagaacttcgctcagaccatgagc
ctgaccttctccgatccgtacttcgaagagccgcgtcacaccgtgcaggaatgcaaggag
aaggattacacctactccgcaccgctgtacgtgaatgccgagttcgagaacggcgacacc
ggcgagatcaagtcccagaccgtgttcatgggcgatttcccgctgcagaccccgcacggt
accttcatcatcggcggcaccgagcgagtcatcgtctcccagctcgtgcgttccccgggc
gtctacttcgaccgccagcaggatcgcacctccgataaggaagtcttcggcgcgaagatc
atcccgagccgtggtgcatggctcgagttcgagatcgataagaaagaccagccgcaggtg
cgcgtggaccgcaagcgcaagcagtccgccatcgtgttcctcatggccatcggcatgacc
aagtccgagatcgcccaggcattcaaggactacccgctggtgctcgacgcactggagaag
gaaaccctcgagacccaggacgaggccctcgttgacctctaccgcaagattcgtccggcc
gacaccccgacccccgaggccggcaagaatctgctggactccttctacttcaacaccaag
cgctacgatctggcccgtgttggccgctacaagatcaaccgcaagctgggtgtcgaggcc
gatttcaacgatcgttccctccaccaggaagacatcatcgccacaatcaagtacctggtg
gccctgcacgacggtgcggcgaccttcccgggcaagcgcaacggcgaagacgttgacctg
cgcgtggacgtcgacgatatcgatcacttcggcaaccgtcgtatccgccaggtcggcgag
ctgattcagaaccagctgcgtaccggtctgagccgtatggagcgcgtggtgcgcgagcgt
atgaccactcaggacgccgaggccatcaccccgcagtccctgatcaacatccgtccggtg
aacgccaccatcaaggagttcttcggcacttcccagctctcccagttcatggatcagaac
aacccgctgtccggtgtgacgaacaagcgtcgtctttccgcactgggccccggcggtctg
tcccgcgaccgcgcctccatggaggtgcgcgacgtgcacccgtcccacttcggccgtatg
tgcccgatcgagtctcctgaaggcccgaacatcggtctgatcggctccctggcaaccttc
ggccgcgtcaacccgttcggcttcatcgagaccccgtaccgcaaggtcgtcaacggccac
gtgaccgacgaggtcgagtacatgaccgctgaccgcgatcttgaccacgtcattgcccag
gccaaccaggagctcgacgagaacggcaacttcgtgcagaagtccgcccttgcccgagtc
ggcgaagaagaggcggtcgatgtgccggtgagctccgtggactacatggacgtctccccg
cgccagatggtctccctcggcgcctccctgattccgttcctggagcatgatgagggccac
cgtgcactgatgggtaccaacatgcagcgtcaggccgtgccgctgatcgaatccgagcgc
ccgctggtgggcaccggctccgaatggcgcgccgccaacgactccggcgacgtcatcaag
tccgagaaggacggtgtggttacctacgtgtccgccgacctgatccgcgtgatgaacgac
gacggcaccaccagctcctacaagctggccaagttccagcgctccaaccagaccacctgc
tacaaccagcgcccgatcgtccacgacggcgagcgtgtggaagccggctcggttatggct
gacggccccgccatccagaacggcgacctggccctgggcaagaacctgctcatcgccttc
atgccgtggaacggctacaactacgaggatgctgtgatcatctcccagcgcctcgtgcag
gacgacaccctctcctccatccacatcgaggagtacgagatcgacgcccgcgaaaccaag
ctgggcgccgaagagatcacccgcgacctgccgaacgtcggcgaggacgctgtggccaac
ctcgacgagcgcggcatcatccgcatcggcgccgaggtcgaggccggcgacatcctggtc
ggtaaggtcaccccgaagggcgagaccgagctgaccccggaggagcgcctgctgcgcgcc
atcttcggcgagaagtcccgcgaggtgcgcgacacctccctgcgcgtgcctcacggcgag
accggtaccgtcatcggcgtcaaggagatcacccgcgaggatgccgaggaggacggcgac
gagctgcccaacggcgtcaaccagatgatccgcgtctacatcgcccagcaccgtaagatc
acggtgggcgacaagctctccggccgccacggcaacaagggctgcatctcccgcattctg
ccggaagaggatatgccgttccttgccgacggtactccggtcgacatcatgttgaacccg
ctgggtgtgccttcccgaatgaacctcggtcaggtgctcgaactgcaccttggctggatc
gcccactccggttgggatatctcccttgacccgaacatggaagccgagtggaagaagctg
attccgtccggtgccgagaaggccgagccgaacaccccggtcgccaccccggtgttcgac
ggtgtcaagcccgaagtcctgaagggcctgttgtccaccacgctgccgaaccgtgacggc
gaccgtctggtcggccccgacggcaaggccaccctgttcgatggccgtaccggtgagccg
tacaccaagccgatttccgtcggctacatgtacatgttgaagctgcaccacctggtcgac
gacaagatccacgcccgttccaccggcccgtactccatgatcacccagcagccgctcggt
ggtaaggcccagttcggtggccagcgcttcggcgagatggaggtgtgggcccttgaggcc
tacggtgccgcctacacgctgcacgagatgatgaccaccaagtccgatgacgtcgacggc
cgcgtgcgcgtctacggtgccatcgtcaagggcgataacctgccgccggcaggtatccct
gagtcgttcaaggtgctcctgaaggaaatgcagtccctgtccctgaacgtcgaagtgctc
aacgccgaaggcgtggccatcgacatgaaggatgaggatgacgatccggccagctccgct
gacgacctcggcttcaacattggcgcccgccccgacgcggccgccaaggaagaccagaag
gccgaagagcccgaataccagtga
DBGET
integrated database retrieval system
