Bifidobacterium longum subsp. longum JCM 1217: BLLJ_0416
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Entry
BLLJ_0416 CDS
T01419
Name
(GenBank) DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
blm
Bifidobacterium longum subsp. longum JCM 1217
Pathway
blm03420
Nucleotide excision repair
blm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
blm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BLLJ_0416
03430 Mismatch repair
BLLJ_0416
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
blm03400
]
BLLJ_0416
Enzymes [BR:
blm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BLLJ_0416
DNA repair and recombination proteins [BR:
blm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BLLJ_0416
MMR (mismatch excision repair)
Other MMR factors
BLLJ_0416
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
DEAD
AAA_30
XdhC_CoxI
Motif
Other DBs
NCBI-ProteinID:
BAJ66085
LinkDB
All DBs
Position
536978..541009
Genome browser
AA seq
1343 aa
AA seq
DB search
MSTFTPSAEQAAIIDAPVDADVLVVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTR
KAAGELLERVSAAVAGDMAGSTTATVSDRAFLKPAIFTYDAFFQTIVRQYGLLVGFDQNT
QPLSAAGALQLATEVIDSHMDLAFSEDFGAFSSLANRVLALSDAIGSAMIGAGCTSFDDA
INRVRQWDSAFINRLQQAVADEPMPEDEPKIPKIKRLKKDTDASWQAKLDDRAEHLHARC
TYHCGALLETTRKRDILLQLVEAYAQAKRERNMAEFSDFTIAAYQLIERFPSIGERTRRR
YSHVLLDEYQDTSTTQAALLAALFHVDASQRSAVNAVGDPFQSIYAWRGASPGAFRMFQQ
DFHLPAGYKPFPLSVTRRNSRIVLEAANNLTLPLRSNPSRPSSSLMREVDVSSLDPMPDA
PEGTLGVLGFATAGQEIDAVVRFCKTAIARHRSAAEQQEQMPGEQKAPVAVLFRSKSHMP
EYQAALEQAGLTTFVVGYSALLERPEIRDLMALLHVAADHTDTGSLMRLLATPRFTMSAA
DLTMLARFAEEQNMEQRFQALVQAGLAQPDTPANEWAAVVREYRDQVANAVFLPDVLLRG
DLVKLLERLSAHGRNAITWAAVMLRQVHDAVGRPLGDVIRAGIEALDLDIDTVLAGVLHN
PQHRANPALAHMPMDAIVDLVDTYTQEIAAEQTPSLHGFITWVDHLASVEDEAASLPDAP
VDVELMTVHQSKGLEWDAVAVVGLTAGGFPSNQGDHLKIVLDEHHTGGTEQGHWTAPEYH
ETADSWLTNPTAVPVPMRADAGILPRFPHDADVEADPIASLAALDDVELIDDEVFGSMRE
FGDGVEEVDASGWYLTQAEEYGRRLHADERRLMYVALTRAREDALMTYCAYTGESGRDPS
VVPKGSRAAQPSNFWLEVHDALQAREHAISAQDCVERLQTANAGKPMLISAQGEAIAPPE
GFFIGEHAAAYSDAVVGEAWQTPITQTNAAVELPWPATLSDAVHEQLSRGIDVIAADSSS
LEQHQDAGPLLQRAQLLVDDADLMADAASGQSLDEAVKAKAQRVLAAGRQNVTSLQARVG
GMNEREERLYWRSIIRPIPRISSPAAEAGTQFHAWAEQFINAGKPDEAVLAYEAEPSMPH
TGQDAGFVSREAMLADLAERERQCRKPSTRQPAVPQPTAQQSVSAVSAVSATSISSDNAT
ESKLVAWQRRLAESSWAKRIPAWTERAIVVDVPGVGLVNGKLDAVFIGGLDPSSTTARFT
VVDWKTGRRPTKPDDITRKLAQLDMYRLLLAAVEGVELDSIDATLYYVSEPDEGLRELHA
RAKTKQEILTELSSGIPEQSDND
NT seq
4032 nt
NT seq
+upstream
nt +downstream
nt
atgagcacgttcactcccagtgcggaacaggccgccatcatcgatgcgccagtcgatgct
gacgtattggtggttgccggtgccggttccggcaaaacctttacgatgacccaacgcatc
atcgcgcttatcaatcgaggtgtggcacctgaacgcatcctgggcctgaccttcacacgc
aaggccgcaggcgaactgctggaacgcgtctccgccgcagtggccggtgatatggcgggc
tctacgaccgccacggtgtctgatcgggcattcctcaagccggccattttcacgtatgac
gccttcttccagaccatcgtgcgccaatatggactgcttgtcggattcgatcagaacacg
caaccattgagcgcagccggagcgcttcaactggccaccgaagtcatcgacagtcacatg
gatctggcgttcagtgaggattttggcgccttctccagtttggcgaaccgtgttctggcg
ttgtcggatgccattggcagtgccatgatcggtgccggctgcaccagcttcgatgatgcg
atcaatcgagtacggcaatgggattcggcattcatcaatcgattgcaacaagccgttgca
gacgaacccatgcccgaggacgagccgaaaatccccaagatcaaacgactgaagaaagat
accgacgccagctggcaagccaagctcgatgaccgtgccgaacatttgcacgcccgctgc
acctatcattgcggtgcgctgctggagaccacacgcaaacgcgatattctgctccagctg
gtggaggcctatgcccaagccaagcgggaacgcaatatggccgaattctccgacttcacc
attgccgcgtatcagcttatcgagcgcttcccctccatcggagagcgtacgcgccgcagg
tacagccacgtgctgctcgacgaatatcaggacacctccaccacgcaggccgctctgctg
gcagcactgttccacgtggatgcgtcacagaggtccgccgtcaacgcggtgggtgatccg
ttccagtcgatttacgcatggcgtggtgccagccctggtgcattccgtatgttccagcaa
gatttccacctgcctgccggatacaagccattcccgttgtccgtcaccaggcgcaacagc
cgtatagtgctcgaagccgccaataatctcacgctgccgttgcgctccaatccgtcgcgt
ccctccagctcattgatgcgtgaggtcgatgtctcatcgctcgaccccatgcctgatgcc
cccgaaggaacattgggagtactgggcttcgccacggccgggcaggagatcgacgccgta
gtgcgtttctgcaagacggccatcgcacggcaccgttccgcagccgaacaacaggaacag
atgccgggcgaacagaaagcgccggtcgccgtgctgtttcggtccaaatcacatatgccc
gaatatcaggcggcattggaacaggccggattgaccacattcgtggtcggctattccgcg
ctgctggaacgtccggaaatccgcgatctgatggcgttgctgcacgtggccgccgaccac
accgatacgggatcgctgatgcgcttgctggccacgccacgattcaccatgtccgcagcg
gatttgaccatgttggcccgttttgctgaagaacagaacatggaacaacgcttccaagca
ttggtgcaggccggccttgcccaaccggatacaccagcgaatgaatgggcggctgtggtg
cgtgagtaccgcgatcaggtggccaatgcggtattcctgccagacgtattgctacgcggc
gacctggtaaaactgcttgaacggttgagcgcacacgggcgcaacgccataacctgggcc
gcggtgatgctccgtcaggtgcatgatgccgtcgggcggccactgggcgacgtgattcgc
gccggcatagaagcgttggatcttgacatcgacaccgtattggccggtgtgctgcataat
ccgcagcaccgcgccaatcccgctttggcgcatatgcctatggatgcgattgtggatttg
gtggatacgtacacgcaagagattgccgctgagcaaactccctcgttgcatgggttcatc
acatgggtggatcatctggcttcggtggaggatgaagccgccagtctccccgacgctccg
gtggatgtggaactgatgaccgtacaccagtccaaagggttggaatgggatgccgttgcg
gtagtggggcttaccgccggcggattccccagcaatcagggcgaccatctcaagatcgtg
ctggacgaacaccatacgggaggcaccgagcaaggtcactggaccgcacccgaatatcat
gagaccgccgactcctggctcaccaaccccaccgccgtgcccgtgcctatgcgcgccgat
gccggcattttgccgcgattcccccatgatgccgatgtggaagccgaccccatcgcatcg
ttggcggctttggatgatgtggagcttatcgatgatgaagtgttcggctccatgcgcgaa
ttcggcgatggcgtggaagaagtggatgcatccggctggtatttgacgcaggcggaggaa
tatgggcgtcggctgcatgccgacgaacgtcgattgatgtatgtggcgcttacccgtgcg
cgggaagatgccctgatgacctattgcgcctatacgggcgaatccgggcgggacccgtca
gtggtgcccaaaggctctcgcgccgctcagccatccaatttctggcttgaagtgcatgac
gcgctccaagcccgtgaacatgcgatatcggctcaggactgtgtggaacggctgcaaacc
gccaatgccgggaagcccatgctgatctcggcgcaaggcgaagcgattgcccctcccgaa
gggttctttatcggagagcatgccgcggcatacagtgacgccgtggtgggggaggcgtgg
caaacgccgattacgcagacgaatgccgccgtcgaattgccgtggccggctaccctcagc
gacgcggtgcatgaacagctgtcacgcggcatcgatgtcatcgccgcagattcctcgtca
cttgagcagcaccaagacgccggcccactcctgcaacgggcacaattgctggtggacgac
gccgatttgatggccgatgccgccagcggccagtcgcttgatgaggcagtcaaagccaag
gcgcaacgcgttctggctgcaggacgccagaacgtgacaagcctgcaagcccgcgtaggt
ggcatgaacgaacgggaggagcgcctctactggcgtagcattatccgcccgattccgcgc
atatcgtctccggcggccgaggccggcacgcagttccatgcgtgggccgagcaattcatc
aatgccggtaagccggatgaagcggtactggcatatgaagccgaaccaagcatgccgcat
acaggtcaggatgcgggattcgtttcccgggaagccatgttggccgatttggccgaacgg
gagcggcaatgccgcaagccatccacacggcagcccgctgtcccacagcccacggctcaa
caatccgtatccgccgtatccgccgtatccgccacttccataagcagcgacaatgccacc
gagtccaagctggtggcgtggcagcgcagactggccgaatcatcgtgggccaagcgcatc
ccggcgtggacggagcgtgccatcgtcgtggacgtgccgggcgtgggcctggtcaatggc
aaactcgatgcggtattcatcggtggacttgacccgtccagcaccaccgcacgctttacc
gtggtcgactggaaaaccggtcgtcggcccaccaagccagacgacatcacccgcaaactt
gcccagctcgacatgtaccgactgctgctggcagcggtcgaaggtgtggaattggacagt
atcgacgccactctctactatgtcagtgagcccgacgagggcttgcgcgagcttcacgcc
cgcgcgaaaaccaaacaggaaatccttaccgagttgagctccggcattcccgaacaatct
gacaacgactga
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