Bifidobacterium longum subsp. longum JCM 1217: BLLJ_0730
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Entry
BLLJ_0730 CDS
T01419
Name
(GenBank) ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
blm
Bifidobacterium longum subsp. longum JCM 1217
Pathway
blm03420
Nucleotide excision repair
blm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
blm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BLLJ_0730
03430 Mismatch repair
BLLJ_0730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
blm03400
]
BLLJ_0730
Enzymes [BR:
blm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BLLJ_0730
DNA repair and recombination proteins [BR:
blm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BLLJ_0730
MMR (mismatch excision repair)
Other MMR factors
BLLJ_0730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
BAJ66398
LinkDB
All DBs
Position
915556..918258
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AA seq
900 aa
AA seq
DB search
MYDEPEVIARSAQELVGDLNPQQAEAVQYRGQALLIGAGAGSGKTRVLTRRIAWILSQFG
AWPSQILAITFTNKAAAEMRERLGSLIGPVAQRMWVSTFHSACVRILRRDGKSIGLKSGF
SIYDSADSERLVKIIATEFNLDIKRYTPRSILGHISDLKNNLTGWKENLAVHAPDFTPGQ
RGYQFGTVGDLEAIYAVIYAEYEHRLALANAVDFDDLIGRTVELLRTDPAVAEYYHHRFR
YILVDEYQDTNHAQYVLVRELAGVDTGEKAIPGAPNAGKSGPAWITVVGDSDQSIYAFRG
ADIRNIQDFEQDFPNAKTTMLEQNYRSTQTILDAANAVISNNEGRKPKKLWTALGKGEPI
VGYAADNAQQEAQWVATEIARLHAEAGIAYSDMAIMYRANAQSRSLEEALINTNQPYQLV
GGTKFYERREIKDALAYLQALVNPDDDVNLRRILNVPKRGLGDRAEGVLLAYAREHGTSF
FYALMHLDEIEVPTRTATSLRAFRDLMGALSQFTRAHDSKPSEIVAEVLEKSGLRAELEK
SVDPQDASRLENLSQLQSTAAEFEQNTPDATLSAFLETTALVADSDQLPGEAEDSGKVTL
MTLHTAKGLEYPVVFLTGMEQGTFPHSRSMEDTTELQEERRLAYVGITRAKQRLYVTRAA
VRSQWGQAADMMPSQFLDEIPDSLIDWKRREAGVERMRASWETDGFADDLGGWDDDDFGG
AAFGGSSTFGSRGSSGSGSSYGSRSRYGSSYGSGSGSSSYGSRSSSYGSRSGSSSYGSRS
RSGSSYGSSGSGSRSSYGSRSRSGSSSGSYGGTRGGKVTTRRTAPKSDSTGSAVPSSKLT
KDNGLNIADFAVGDMISHDQYGLGKVTDAQDKGRNSVITVDFGSAGVKRLMLRVAPIEKL
NT seq
2703 nt
NT seq
+upstream
nt +downstream
nt
gtgtacgacgagccggaagtcatcgcacgcagcgcacaggaactcgtgggcgacctgaac
ccgcagcaggcggaagccgtgcaataccgcggtcaggcgctgctgatcggagccggtgca
ggctccggcaaaacccgcgtgctgacccgccgcatcgcctggatcttgagccagttcggc
gcatggccgagccagattctagccatcaccttcaccaacaaggccgccgccgaaatgcgc
gaaagactcggctcgctgatcggcccggtggcccagcgcatgtgggtctccaccttccac
tccgcctgcgtgcgcattctgaggcgcgacggcaagtccatcggactcaagtccggcttc
tccatctacgattccgccgactccgagcgactcgtcaaaatcatcgccaccgaattcaac
ctcgacatcaagcgctacactccacgctcgattctcggccatatctccgacctcaagaac
aatctgaccggttggaaggaaaacctcgccgttcacgcgcccgacttcacgcccggccag
cgcggctaccagttcggcacggtgggcgaccttgaagccatctacgcggtgatctacgcc
gaatacgagcatcgcttggccctggccaacgccgtcgacttcgacgatctgatcggccgc
acggtcgagttgctgcgcactgacccggccgtcgccgagtactaccatcaccgcttccgt
tacattctggtcgacgagtatcaggacaccaaccacgcccagtacgtgctcgtgcgcgag
ctggccggcgtggacacgggggagaaggccatcccgggcgcgcctaacgccggcaagtcc
ggccccgcctggatcaccgtggtgggcgattccgaccagtccatctacgcgttccgtggt
gccgacatccgcaacattcaggacttcgagcaggacttcccgaacgccaagaccaccatg
ctcgaacagaactatcgttcgacgcagaccattctggatgcggccaacgcggtgatcagc
aacaacgagggccgcaagcccaagaaactgtggaccgcgctcggcaagggcgagccgatc
gtcggctacgcggcggacaacgcccagcaggaggcccagtgggtggccaccgaaatcgcg
cgcctgcacgccgaagcgggcatcgcctactccgacatggcgatcatgtaccgcgccaac
gcccaatcccgctcgctcgaagaggcgctgatcaacacgaatcagccgtatcagctcgtc
ggcggcaccaagttctacgaacgtcgcgaaatcaaggatgcgctggcctatttgcaggcg
ctcgtcaatccggacgacgatgtgaatctacgccgtattctcaacgtgcccaagcgtggg
cttggcgaccgcgccgaaggcgtgctgctcgcctacgcgcgcgagcatggcaccagcttc
ttctacgcactcatgcacttggatgagatcgaggtgccgacacgcaccgccacctcgcta
cgagcattccgcgatctgatgggcgcgctctcgcagttcacgcgcgcgcacgactccaag
cccagcgagatcgtggccgaagtattggagaagtcgggcttaagggccgaactcgagaaa
tccgtggacccgcaggacgcctcccgtctggagaacctctcccagctgcagtccactgcc
gccgaattcgaacagaacacgcctgacgccacgttgtccgcattcctggagaccaccgcg
cttgtggccgactccgaccaactacccggcgaggcggaggactccggcaaggtgacgctt
atgaccttgcacaccgccaagggcctcgaatacccggtggtgttcctgaccggcatggaa
cagggcaccttcccgcattcgcgttcgatggaagacaccactgaactgcaggaggaacgc
cgactcgcctatgtgggcatcacgcgcgccaagcagcgactgtatgtcacgcgcgccgcc
gtccgctcccagtggggccaggccgccgatatgatgcccagccagttcctcgacgagatt
ccggattcgctgattgattggaaacgccgtgaagccggcgtggagcgtatgcgcgccagc
tgggagaccgatggattcgccgacgatttgggcggctgggatgatgacgatttcggcggc
gccgcgtttggcgggtcgtcgacgttcggctcgcgtggttcgtccggttcgggttcgtcc
tatgggtcgcggtcgcggtatgggtcgtcgtatggctcgggttccggctcttcgtcgtat
ggttcccgttcatcgtcgtatggttcccgctccggctcgtcctcctatggttcccgctcc
cgttcgggttcgtcctatggttcttcaggctccggttcgaggtcgtcctacgggtcgcgt
tcccgttccggttcttcgtccggttcatatggtggcacccgtggcggcaaggtcaccacg
cgccgtaccgcaccgaaatccgattcgaccggctctgccgtgcctagctcgaagctcacc
aaggacaatggcctgaatatcgccgacttcgccgtgggcgacatgatcagccacgaccag
tacggtctcggcaaggtcaccgacgcacaagacaagggccgcaattcggtaatcaccgtg
gacttcggctccgccggcgtcaaacgcctcatgctccgcgtagcgccgattgagaagttg
tag
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