Bifidobacterium longum subsp. longum JCM 1217: BLLJ_1310
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Entry
BLLJ_1310 CDS
T01419
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
blm
Bifidobacterium longum subsp. longum JCM 1217
Pathway
blm03030
DNA replication
blm03430
Mismatch repair
blm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
blm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BLLJ_1310
03430 Mismatch repair
BLLJ_1310
03440 Homologous recombination
BLLJ_1310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
blm03032
]
BLLJ_1310
03400 DNA repair and recombination proteins [BR:
blm03400
]
BLLJ_1310
Enzymes [BR:
blm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BLLJ_1310
DNA replication proteins [BR:
blm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BLLJ_1310
DNA repair and recombination proteins [BR:
blm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BLLJ_1310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
MCM10_OB
tRNA_anti_2
DUF655
DUF5487
Motif
Other DBs
NCBI-ProteinID:
BAJ66977
LinkDB
All DBs
Position
complement(1543679..1547236)
Genome browser
AA seq
1185 aa
AA seq
DB search
MADYGNNFVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMYTNCV
ANGVKPIIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNL
IKASSVANLEGRVMRYPRMDKEVLATYSKGVIASSGCPSGIIQTRLRLGQFEEALRAAGE
FQDIFGKDNFFIELMDHGLPIETQVTGDLLTIAKKLNAPLLATNDSHYVHAEDAQAQDAM
LCINSGSRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLVIAERCNVMFDDHED
GAFMPKFPCPEGWDETSLFLKKVEEGLEKRYDGNPPLDVLKQADYECGVICQMQFCGYFL
VVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPERVSLPDI
DVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGEKITKA
LPPAATGGKDISLHDIFDPAAKRYAEAREFRELYDSDPDTKRITEEAKGIEGLIRQTGVH
ACATIMGSAPITDTSPLLERTDGTITTTFEYHTCETLGLVKMDFLGLSNLTIIHDTLKNI
EANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKTLKPDNFNDISALIA
LYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIYQEQVQSAARIL
AGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQAVWDILVPFSGYAFN
KAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARRMGIQVLSPDVN
ESVYEYSAVGDVVRFGLGAIRNVGDKAVADIIAEREGPRGKFVNFMDFIRRVPLTALNRR
LVESLIKAGAFDSIDPNRRALLTVHEAAIDSVVSLKRKQAEGQFDLFSDAEDGGAEAMGD
ASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSIAHLVDRAKTMGE
GQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFFGKVYEAAAAELAVDAIVQI
RGQVELRDETVSLRATEMQIPTLEAEDERPLVITLPPVALERQRMMQLGQVLANHPGYCE
VHLAVLDEKGNAQVLTFGDRFRVKRDTSLFAEIKILFGPSCLPAA
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atggctgattacgggaacaactttgtgcaactgcataaccatacgcactattcgctgctc
gatggtgcgtcgaagattcctgatttggccaagcgtgcggccgaacttggcatgcctgcg
gtcggtatcaccgaccatggcaacatgcatggcgcctacgagatgtacaccaactgcgtg
gccaatggcgtcaagcccatcatcggcatcgaagcttacgtgaccccggaaaccgcgcgt
caagacaagtcccgtgtgcactggggcaccgaagcccagcgccgcgacgacgtctccggt
ggtggtcttatcacccacttgaccatgtgggccgaaaacgacgaaggcctggtcaacctc
atcaaagcctcgtccgtggccaacctcgaaggtcgcgtcatgcgctacccgcgtatggat
aaggaggtgctcgccacctattccaaaggtgtgatcgcctcctccggatgcccttcgggc
atcatccagactcgtctgcgcctcggtcaattcgaggaggccctgcgcgccgccggcgaa
ttccaggacatcttcggcaaagacaacttcttcatcgaactcatggatcacggtctgccc
atcgaaactcaggtgaccggtgacctgctgaccatcgccaagaaactcaacgcaccactg
ctggccaccaacgattcccactacgtacacgccgaagatgcacaggcgcaggacgccatg
ctctgcatcaactccggttcccgtcttgacgatccggaccgattcaagttcgacggcacc
ggctactacatcaaaaccgccgaagagatgcgcgaactgttcaaggaccacccggacgcc
tgcgacaatacgctcgttatcgccgaacgctgcaacgtgatgttcgacgaccacgaagac
ggcgcgttcatgccgaaattcccttgccccgaaggctgggatgagacctccctgttcctc
aaaaaagtcgaggaaggtctggagaagcgttacgacggcaacccgccgctcgacgtattg
aagcaggccgactacgaatgtggtgtgatctgccagatgcagttctgcggatacttcctc
gtggtcgccgactacattcagtgggccaaggaccacggcattatggtggggccgggccgt
ggttcggccgcaggcgccatggtcgcctattccatgggcattaccgagctcgatccgctc
aagcatggcctgattttcgagaggttcctgaaccctgagcgagtgagccttcctgatatc
gatgtcgacttcgaccctgaaggtcgtgcgcgagtcatcgaatactgcggcgaaaaatac
ggcaccgataaggtcgcccagtgcgtgatctatggcaccatcaaaaccaagcaggccctg
aaagactccgcccgcatcatgggttatgaattctcagtcggtgaaaaaatcaccaaggcg
ctgcctccggcggccaccggcggcaaagacatcagcctgcatgacatcttcgaccctgcc
gccaaacgttatgccgaggccagggaattccgagaactctacgattccgacccggacacc
aagcgcatcaccgaggaagccaagggtatcgaaggcctgatccgacagaccggtgtacat
gcctgcgccaccatcatgggtagcgcacccatcaccgacacctcgccgttgctggaacgc
accgatggcaccatcaccaccaccttcgaataccacacgtgcgaaacgttggggctggtc
aagatggacttccttggcctgtccaacttgacgatcatccacgacaccctgaagaacatc
gaggccaacggcaaacccgccatcgactacaccaagattccgctcgatgacgccgaaacc
tacaaactcatgtcccgaggagacacgctcggcgtgttccagctcgattccgacggcatg
cgttcactgctgaaaaccctgaagcccgataacttcaacgatatttccgcacttatcgcc
ctgtaccgaccgggcccgatgagtatggattcgcacaccaactatgccaagcgcaaaaac
ggcctgcagaagatcacgccaattcaccctgagcttgaggagcctctgaagcaggtgctt
gacgagacctatggtctgatcatctaccaggagcaggtgcagtccgccgcccgaatcctc
gccggttattcactgggcaaggcagacgtgctgcgtcgagccatgggtaagaagaagccc
gaagtgctggccaaggagaaggtgccgttcttcgccggtatgaaggagcacggatattcc
gaagaggcatcccaggccgtgtgggatattctggtgccgttctccggctacgctttcaac
aaagcgcactccgccgcatacggtctgatctcctactggaccgcatatctgaagacgcac
tacccggtcgagttcatggccgccctgttgcaaggtgccgccaccaacaaagacaagacc
gcactgtacttgggcgaggcccgccgcatgggcatccaggtgctctcgccggacgtcaac
gaatcggtgtacgagtactcggcagtcggcgacgtcgtccgattcggtcttggtgccatc
cgtaacgtgggtgacaaggccgtggccgatatcatcgccgaacgcgaaggcccgcgcggc
aagttcgtgaacttcatggacttcatccgccgcgtgcccctgaccgcgctgaaccggcga
ttggtcgaatcgttgatcaaggccggtgccttcgactcgattgacccgaaccgtcgcgcg
ctgctcaccgtgcacgaggccgccatcgattcggtggtgagtctgaagcgcaaacaggcg
gagggccagttcgatttgttctccgatgccgaggatgggggagcggaggccatgggcgac
gcttccgtgaccgtacccgatcttgaggaatgggacaagaagaccaaacttaacttcgaa
cgcgaaatgttgggcctgtatgtgtctgaccatccgctctccggtatgcagtcgattctc
gcgtccttgcgtgaaatgtccatcgcgcatctggttgatcgagccaaaacgatgggtgaa
ggacagcaggtcacgttggctggtttggtcaccaatgtggaccggcgcgtatccaagaag
ggcaacccctgggccatcgtgaccatcgaagacatggaaagctccatccaatgcatgttc
ttcggcaaggtctatgaagcggccgccgccgaacttgccgtggacgccatcgtacagatt
cgtggccaagtggagttgcgcgacgaaaccgtttctctgagagccacggaaatgcagatt
ccgaccttggaagccgaggatgaacgtccgttggtcatcacgctgccgccggtggcgttg
gagcgccaacgcatgatgcaactcggtcaggtgctcgctaatcatcctggttactgcgaa
gtacatcttgcggtgctggatgagaagggtaacgctcaggtgctcacgtttggcgatcgt
ttccgcgtcaagcgagatacttcgttgtttgctgagatcaagattctgtttggccccagc
tgcttgcctgccgcctga
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