Bifidobacterium longum subsp. infantis ATCC 15697 (JGI): Blon_1616
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Entry
Blon_1616 CDS
T00794
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
bln
Bifidobacterium longum subsp. infantis ATCC 15697 (JGI)
Pathway
bln03420
Nucleotide excision repair
bln03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bln00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Blon_1616
03430 Mismatch repair
Blon_1616
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bln03400
]
Blon_1616
Enzymes [BR:
bln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Blon_1616
DNA repair and recombination proteins [BR:
bln03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Blon_1616
MMR (mismatch excision repair)
Other MMR factors
Blon_1616
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ACJ52695
UniProt:
B7GSB5
LinkDB
All DBs
Position
complement(1766760..1769453)
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AA seq
897 aa
AA seq
DB search
MYDEPEVIARSAQELVGDLNPQQAEAVQYRGQALLIGAGAGSGKTRVLTRRIAWILSQFG
AWPSQILAITFTNKAAAEMRERLGSLIGPVAQRMWVSTFHSACVRILRRDGKSIGLKSGF
SIYDSADSERLVKIIATEFNLDIKRYTPRSILGHISDLKNNLTGWKENLAVHAPDFTPGQ
RGYQFGTVGDLEAIYAVIYAEYEHRLALANAVDFDDLIGRTVELLRTDPAVAEYYHHRFR
YILVDEYQDTNHAQYVLVRELAGVDTGEKAIPGAPNAGKSGPAWITVVGDSDQSIYAFRG
ADIRNIQDFEQDFPNAKTIMLEQNYRSTQTILDAANAVISNNEGRKPKKLWTALGKGEPI
VGYAADNAQQEAQWVATEIARLHAEEGIAYSDMAIMYRANAQSRSLEEALINTNQPYQLV
GGTKFYERREIKDALAYLQALVNPDDDVNLRRILNVPKRGLGDRAEGVLLAYAREHGTSF
FYALMHLDEIEVPTRTATSLRAFRDLMGALSQFTHAHDSKPSEIVAEVLEKSGLRAELEK
SVDPQDASRLENLSQLQSTAAEFEQNTPDATLSAFLETTALVADSDQLPGEAEDSGKVTL
MTLHTAKGLEYPVVFLTGMEQGTFPHSRSMEDTTELQEERRLAYVGITRAKQRLYVTRAA
VRSQWGQAADMMPSQFLDEIPDSLIDWKRREAGVERMRANWETDGFADDLGGWDDDDFGG
ATFGGSSTFGSRGSSGSGSSYGSRSRYGSSYGSGSGSSSYGSRSGSSYGSRSSSYDSRSG
SSSYGSRSRSGSSYGPRSRSGSSSGSYGGTRGGKVTTRRTTPKSGSTGSAVPSSKLTKDN
GLNIADFAVGDMISHDQYGLGKVTDAQDKGRNSVITVDFGSAGVKRLMLRVAPIEKL
NT seq
2694 nt
NT seq
+upstream
nt +downstream
nt
gtgtacgacgagccggaagtcattgcacgcagcgcgcaggaacttgtaggcgatctgaac
ccgcagcaggcggaagccgtgcaatatcgcggtcaggcgctgctgatcggcgccggtgcc
ggctccggcaaaacccgcgtgctgacccgccgcatcgcctggatcttgagccagttcggc
gcatggccgagccagattctggccatcaccttcaccaacaaggccgccgccgaaatgcgc
gaacgactcggttcgctgatcggcccggtggcccagcgcatgtgggtctccaccttccat
tccgcctgcgtgcgcattctgaggcgcgacggcaagtccatcgggctcaagtccggcttc
tccatttatgattccgccgactccgagcgactcgtcaaaatcatcgccaccgaattcaac
ctcgacatcaagcgctacactccacgctcgatcctcggccatatctccgacctcaagaac
aatctgaccggttggaaggaaaacctcgccgttcacgcgcccgacttcacgcctggccag
cgcggctaccagttcggcacggtgggcgaccttgaagccatctatgcggtgatctacgcc
gaatacgagcatcgcttggccctggccaacgccgtcgacttcgacgatctgatcggccgc
acggtcgagttgctgcgcaccgacccggccgtcgccgagtactaccatcaccgcttccgt
tacattctcgtcgacgagtatcaggacaccaaccacgcccagtacgtgcttgtgcgcgag
ctggccggtgtggacacgggggagaaggccatcccgggcgcgccgaacgccggcaagtcc
ggccccgcctggatcaccgtggtgggcgattccgaccagtccatctacgcgttccgtggc
gccgacatccgcaacatccaggacttcgagcaggacttcccgaacgccaagaccatcatg
ctcgaacagaactatcgttcgacgcagaccattctggatgcggccaacgcggtgatcagc
aacaacgagggccgcaagcccaagaaactgtggaccgcgctcggcaagggcgagccgatt
gtcggctacgcggcggacaacgcccagcaggaggcccagtgggtagccaccgaaatcgcg
cgcctgcacgccgaagagggcatcgcctactccgacatggcgatcatgtaccgcgccaac
gcccaatctcgctcgctcgaagaggcgctgatcaacacgaatcagccgtatcagctcgtc
ggcggcaccaagttctacgaacgtcgcgaaatcaaggatgcgctggcctatttgcaggcg
ctcgtcaatccggacgacgatgtgaatctacgtcgtattctcaacgtgcccaagcgcggg
cttggcgaccgcgccgaaggcgtgctgctcgcctacgcgcgcgagcatggcaccagcttc
ttctacgcactcatgcacttggatgagatcgaggtgccgacccgcaccgctacctcgcta
cgagcattccgcgatctgatgggcgcgctctcgcagttcacgcacgcgcacgactccaag
cccagcgagatcgtggccgaagtattggagaagtcgggcttaagggccgaacttgagaaa
tccgtggatccgcaggacgcctcccgtctggagaacctctcccagctgcagtccaccgca
gccgaattcgaacagaacacgcctgacgccacgttgtccgcattcctggagaccactgcg
ctcgtggccgactccgaccagctgcccggtgaggcggaggactccggcaaggtgacgctc
atgaccttgcacaccgccaagggcctcgaatacccggtggtgttcctgaccggcatggaa
cagggcaccttcccgcattcgcgttcgatggaagacaccactgaactgcaggaggaacgc
cgactcgcctatgtgggcatcacgcgtgccaagcagagactgtatgtcacgcgcgccgcc
gtccgctcccagtggggccaggccgccgatatgatgcccagccaattcctcgacgagatt
ccggattcgctgattgattggaaacgccgtgaagccggcgtggagcgtatgcgcgccaac
tgggagaccgatggattcgccgacgatttgggcggctgggatgatgacgatttcggcggt
gccacgtttggcgggtcgtcgacgttcggctcgcgtggttcgtccggttcgggttcgtcc
tatgggtcgcggtcgcggtatgggtcgtcgtatggctcgggttccggctcctcgtcgtat
ggttcccgttcaggttcttcgtacggttcccgttcatcatcatatgattcccgctccggc
tcgtcctcctacgggtctcgctcccgttcggggtcgtcttacgggccgcgttcccgttcc
ggttcttcgtccggttcatatggcggtacccgtggcggcaaggtcaccacgcgccgcacc
acaccgaaatccggttcgaccggctctgccgtgcccagctcgaagctcaccaaggacaat
ggcctgaatatcgccgacttcgccgtgggcgacatgatcagccatgatcagtacggtctc
ggcaaggtcaccgacgcgcaagacaagggtcgcaattcggtaatcaccgtggacttcggc
tccgccggcgtcaaacgcctcatgctccgcgtagcacctattgagaagttgtag
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