Bifidobacterium longum subsp. infantis ATCC 15697 (JGI): Blon_1838
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Entry
Blon_1838 CDS
T00794
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bln
Bifidobacterium longum subsp. infantis ATCC 15697 (JGI)
Pathway
bln03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bln00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Blon_1838
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bln03400
]
Blon_1838
Enzymes [BR:
bln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Blon_1838
DNA repair and recombination proteins [BR:
bln03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Blon_1838
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
CBS
AAA_22
AroM
Motif
Other DBs
NCBI-ProteinID:
ACJ52913
UniProt:
B7GTK4
LinkDB
All DBs
Position
complement(2001023..2004607)
Genome browser
AA seq
1194 aa
AA seq
DB search
MAGEATHPDLINGSLVGILSGLEQDKTFLRLATGDIEVSDDVDNSVLAGIPEGLRPALAA
AIGQGVAGKPGKPVVLVVASGREAEETVGSLRSWYDGDPNDIAQLEAWETLPHERLSPRA
DTVASRMAVFRRLKHPSDTDPMFGPIRILVMPIRSLIQPVVQGLGDVEPLVFTVGEDLPL
DEAAKRLIENAYTRVDLVMDRGEFAVRGGILDVFPPTAPHPVRIEFFGDEIDTIKEFHAS
DQRTYGDGLKTIWATACRELQLTDAVRARAKALVGSIPNAEDMLESIANAIPVEGMESLM
PALVDHLEPVGSMLPKHAVILLSDPEKLRRSAEDLAKTANEFLAASWHVAASGHGSGAPI
SFDEASFLDYAETISSLEYSEHPVIRLTSFGVDTTLTGHVQLDAQNPAEFRGDEAKASQG
IEGLLDAGFHVTITAAAAGTLARLKRAINTTGIANFNVIRSQAIDGFVDKAAKIALLTER
DLTGRTSAVAVAKTPKRRRKAIDLVELKKGDYVVHEQHGIGRFIEMRQRTIGTGANKTTR
EYLVIEYAPSKRGAPADKLFIPTDQLDQVSKYIGAEAPKLNKLGGSDWAATKAKARKHVH
EIADDLIKLYSARQRAKGFAFSPDTPWQKELEDAFPYQETADQLTTIDEVKSDMEKPVPM
DRLICGDVGFGKTEIALRAAFKAVQDGKQVAVLVPTTLLVQQHYETFSERFEGFPVNVAA
MSRFQTTKEINGTVEGLRSGTVDVVIGTHKLLNPKITFKDLGLVIIDEEQRFGVEHKETL
KALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPVLTYVGAYEDAQVTAAV
RRELLRGGQVFYVHNRVQDIASIADKIHTLVPEAHVGIAHGKMGEKQLDQIIRDFWHRDI
DVLVCTTIIETGLDISNANTLIVDHADRFGLSQLHQLRGRVGRGRERAYAYFLYDPSKPM
TEQSHDRLATIAQNTALGSGFDVAMKDLELRGTGNLLGDEQSGHIEGVGFDLYVRMVSEA
VEKYKEPEENVEPVAVSIDLPIEASIPIGYIDSDKLRLEAYRKLASARNEADLKDLEEEL
TDRYGKPPVEFETLFDVARLKFKARKIGISEILAQSNRVRIGRIDPPESIQMRMGRIYKG
TQYRPVTHQLIVPTPFTGSLGQGPMSSDQVVLWTNQLLDDLAWTPSLSKRQSRL
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atggccggtgaggcgacgcacccggacctgatcaacggctcactggtaggcatcctgtcc
gggctggaacaggacaagaccttccttaggctcgccactggcgacatcgaggtttcggac
gacgtcgacaactccgtcctggccggcatccccgaaggtttgcgcccggctttggccgcc
gccataggccagggtgtggccggcaaacccggcaagccggtcgtgctggtcgtggcctcc
ggccgcgaagccgaagagaccgtgggctcgctgcgctcctggtatgatggcgacccgaac
gacatcgcccagctcgaagcctgggaaaccctgccgcacgagcgtctgagcccgcgcgcg
gacaccgtggccagccgcatggccgtgttccgcagactcaagcatccgagcgataccgat
ccgatgttcggcccgattcgcattctcgtcatgccgatccgctcgctcatccagccggtc
gtccaaggactgggcgacgtcgagccgctcgtgttcaccgtgggggaggacctgccactc
gacgaagccgccaaacgtctgatcgaaaacgcctacacgcgcgtggacctggtcatggac
cgtggcgagttcgcggtgcgcggaggcattcttgacgtattcccgcccaccgcaccgcac
ccggtgcgtatcgaattcttcggcgacgaaattgacaccatcaaggaattccacgcctcc
gaccagcgtacctacggcgacggcctcaagaccatctgggccaccgcatgccgtgaactg
cagctgaccgacgccgtgcgcgcccgcgccaaagccttggtcggttcgattcccaatgct
gaggacatgctcgaatccatcgccaacgccattccggtcgaaggcatggaatccctgatg
cccgcactcgtggaccatctggaaccggtgggctccatgctgcccaagcatgccgtgatc
ctcctgagcgacccggagaaactgcgccgttccgccgaagacttggcaaaaaccgcgaac
gagttcctggccgccagctggcatgtggccgcctccggccacggctccggcgcgcccatc
agcttcgacgaagccagcttcctcgactatgcggaaaccatcagctccctcgaatactcc
gaacatccggtgattcgcctcaccagtttcggcgtggacaccacgctgaccggccacgtg
cagctcgacgcccagaacccggccgaattccgaggggatgaggccaaggcctcccaaggc
atcgaaggcctgctcgatgccggcttccacgtcaccatcaccgccgctgcggccggcacc
ttggccagactcaagcgcgcgatcaacactaccggcatcgccaatttcaacgtcatccgc
tctcaggccatcgacggcttcgtggacaaagccgccaaaatcgccctgctcaccgaacgc
gacctgaccggccgcacttcagccgtggccgtggccaaaacgccgaaacgccggcgcaag
gccatcgacttggtggaactcaaaaaaggcgattacgtggtgcacgagcagcacggcatt
ggccggttcatcgaaatgcgccagcgcaccatcggcaccggcgccaacaaaaccactcgc
gaatacctggtcatcgaatatgcgccttccaagcgcggcgccccggcggacaaactgttc
atccccaccgaccagctcgaccaggtcagcaaatacatcggtgccgaagcccccaagctc
aacaagctcggcggctccgactgggcggccaccaaagccaaggcccgcaagcacgtccac
gagatcgccgacgacctgatcaagctgtactccgcccgccagcgcgccaagggcttcgcg
ttcagcccggacaccccatggcagaaagagctggaagacgccttcccctatcaggaaacc
gccgaccagctcaccaccatcgacgaggtcaaatccgacatggaaaagcccgtgccgatg
gatcgcctcatctgcggcgacgtgggcttcggcaaaaccgaaatcgcattgcgcgcggcc
ttcaaggccgtgcaggacggcaagcaggtggccgtgctcgtgcccaccacgctgttggtc
cagcagcattacgagaccttcagcgaacggttcgaagggttcccggtcaatgtggcggcc
atgagccggttccagaccaccaaggagatcaacgggaccgtcgagggcctgcggtccggc
acggtggacgtggtcatcggcacacacaaactgctgaaccccaagatcacgttcaaggat
ctggggctcgtcatcatcgacgaggagcagcgtttcggcgtggaacacaaggaaacgctg
aaggcactgcgcaccaatgtggacgtgctgtccctgtccgcgacgcctatcccgcgcacg
ctggagatggccgtgaccggcatccgcgaaatgtccacgctggccaccccgcccgaagac
cggttgccggtgctgacctatgtgggagcctacgaggacgcgcaggtcaccgcggcggtg
cgccgcgaactgttgcgcggcggccaggtgttctacgtgcacaatcgcgtgcaggacatc
gcgtccatcgccgacaagatccatacgctggtgcccgaagcgcacgtcggcatcgcccac
ggcaagatgggtgagaagcagcttgaccagatcatccgcgacttctggcatcgtgacatc
gacgtgctcgtgtgcaccacgatcatcgagacgggtcttgacatatccaacgcgaacacg
ctgatcgtcgaccatgccgaccgtttcggcctgagccagcttcatcagctgcgcggccgc
gtcggccgtggacgtgaacgcgcgtacgcctacttcctgtacgacccgtccaagccaatg
accgagcaatcccacgacaggctcgccacgatcgcgcagaacacggcgctcggctccggt
ttcgacgtggccatgaaggatctggagctgcgtggcaccggaaaccttctgggcgacgag
cagtccggccatatcgagggcgtgggcttcgacctgtacgtacgcatggtgtccgaagcc
gtggagaagtacaaggagcccgaagagaacgtcgagccggtggccgtatccatcgacctg
cccatagaggcgtcgattccgatcgggtacatcgattcggacaagctgcgtctggaagcg
taccgcaagctcgcctccgcccgcaacgaggccgatttgaaggatttggaagaggagctc
accgaccgttacggcaagccgccggtcgaattcgagaccttgttcgatgtggcccgtctg
aagttcaaggcccgcaagatcggcatttcggagattctcgcgcaatccaaccgcgtgcgc
atcggccgtatcgacccgcccgaatccatccagatgcgtatgggtcgtatttacaagggc
acccaataccgtccggtcacacaccagctcatcgtccccaccccgttcaccggctccctg
ggccaaggccccatgagctccgaccaggtagtcctctggaccaaccagttgcttgatgat
ttggcatggaccccgtcgttaagcaaacggcagagccgtttgtag
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