Bifidobacterium longum subsp. infantis ATCC 15697 (JGI): Blon_2001
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Entry
Blon_2001 CDS
T00794
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bln
Bifidobacterium longum subsp. infantis ATCC 15697 (JGI)
Pathway
bln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Blon_2001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bln03019
]
Blon_2001
03400 DNA repair and recombination proteins [BR:
bln03400
]
Blon_2001
Enzymes [BR:
bln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Blon_2001
Messenger RNA biogenesis [BR:
bln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Blon_2001
DNA repair and recombination proteins [BR:
bln03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Blon_2001
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
HRDC
RQC
RecQ_Zn_bind
ResIII
Rhodanese
Motif
Other DBs
NCBI-ProteinID:
ACJ53068
UniProt:
B7GUC2
LinkDB
All DBs
Position
complement(2183488..2185443)
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AA seq
651 aa
AA seq
DB search
MTAHQAALEALTRYFGYDSFRPGQQGIVEALLAGRDVLGVMPTGAGKSVCYQIPAALSPG
ATLVISPLISLMRDQVDALNDLGLPAAFINTTQTPDEQAMVFAQAAAGQIKLLYVAPERL
ETGRFRDFAARTPISLIAVDEAHCVSQWGQDFRSSYLGIGDFIAGLPQRPPVGAFTATAT
ERVRRDIVGLLGLRNPAVTVTGFDRSNLYFDVVKLETKYKAAWVARYVADHTDESGIVYC
ATRKTTEALADTLNQMGHPAVAYHGGMSPDAREAAQRDFITDKVPVVVATNAFGMGIDKS
NVRYVIHHNLPESIEAYYQEAGRAGRDGEPSRCTLLWNESDIVTRRRLLDNDYENERLTP
EEQEIVRQSKRRLLDGMVGYCRTTDCLHRYMTRYFGQELSSNAGSTAGEDIAADSSQSGR
CGACSNCESTFETIDVTRVAQAISRCVHDVGQRVGSGKIVKILRGSRAQDLAWLNPERMP
TFGMLKDVNEARVRDVLSQMATDGYLSIAEGRMPIVMFGARAAETAAPDFHYEIKRVERK
SAAAGSGRSGGVADTADSANVPGDALGSYIPDDDEESLFQKLRELRRTIAQEIGKPPYIV
FSDKTLRDMARIKPVTNAQFLAVNGVGQHKLDLYGQRFMQTVASFNAGSAS
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgacagcacatcaggcggcgctggaggcgctcacacgatacttcggctatgactcgttt
aggcccggacagcaaggaattgtcgaggctttgcttgccggacgcgatgtcttgggcgtg
atgcccaccggcgcaggcaagtccgtgtgctaccagattcccgccgcgctcagcccgggt
gcgactttggtcatatctcccttgatttccctgatgcgcgaccaggtcgatgcgctgaac
gacctcggtctgccggccgcgttcatcaacaccactcaaactcccgacgagcaggcgatg
gtgttcgcccaagccgccgccggacagatcaaactgctgtacgtggccccggaacgcttg
gaaaccgggcgattccgcgactttgccgcccgtacgccgatctcgctgatcgccgtggac
gaagcccactgcgtctcccagtggggtcaggacttccgctcgtcgtacttaggtatcggc
gatttcatcgccgggctgccgcagcgtccaccggtgggtgcgttcaccgccaccgccacc
gaacgggtgcgccgggacatcgtgggactgctgggattgcggaatccggccgtcaccgtt
accggattcgaccggtcgaacctgtattttgatgtggtcaaactggagaccaaatacaag
gccgcatgggtggcgcggtatgtggccgaccatacggacgaatccggcatcgtctactgc
gccacccgcaagaccaccgaagcactcgccgacacgctgaaccagatggggcatccggct
gtcgcctaccatggcggcatgtcgccggacgcgcgtgaggcggcccagcgcgacttcatc
accgacaaggtgccggtggtcgtggccaccaacgctttcggcatgggcatcgataagtcc
aacgtgcgttacgtcatccaccacaatctgcccgaatccattgaggcctactatcaggag
gccggccgcgcgggccgtgacggcgagcccagccgatgcacgctgctgtggaatgagtca
gacatcgtcacccggcgtcggttgctggataacgattatgagaacgagcgattgactccc
gaagagcaggaaatcgttcgccagtccaagcgccggctgctggacggtatggtcggctac
tgccgcaccaccgactgcctgcaccggtatatgacccggtatttcggtcaggaattgtcg
tcgaatgctggttccacggcgggtgaagacattgcggcggactcttcgcagtccggcaga
tgcggtgcctgctcgaactgtgaaagcacgttcgagaccatcgacgtgacccgcgtggcg
caggcaatcagccgttgcgtgcatgacgtggggcagcgcgtcggttccggcaagatcgtc
aagatcctgcgcggttcgcgggcacaggatctggcatggctgaacccggagcggatgccc
accttcggcatgctcaaggacgtgaacgaggctcgcgttcgcgacgtgttgagccagatg
gccacggacggttacctgtcaatcgccgaagggcgtatgccaatcgtcatgttcggtgcg
cgggcggccgaaaccgccgctcccgacttccactatgagatcaaacgggtggaacgcaag
tcggcggcggccggttccggtcggagcgggggagtggctgatactgccgattccgccaat
gttcccggcgatgcgctgggctcgtatatcccggacgatgacgaggaatcgctgttccag
aagctacgcgaactgcgacgcaccatcgcccaggaaatcggcaagccgccgtacatcgtg
ttctccgacaagaccttgcgcgacatggcccgcatcaagccggttaccaacgcgcaattt
ctggcggtcaacggcgtcggtcaacacaagctcgacctctacggccagcgcttcatgcaa
accgtcgcctcgttcaatgccgggagtgcgtcataa
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