Bifidobacterium longum subsp. infantis ATCC 15697 (JGI): Blon_2302
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Entry
Blon_2302 CDS
T00794
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bln
Bifidobacterium longum subsp. infantis ATCC 15697 (JGI)
Pathway
bln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Blon_2302
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bln03019
]
Blon_2302
03009 Ribosome biogenesis [BR:
bln03009
]
Blon_2302
Enzymes [BR:
bln01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Blon_2302
Messenger RNA biogenesis [BR:
bln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Blon_2302
Ribosome biogenesis [BR:
bln03009
]
Prokaryotic type
rRNA processing factors
Blon_2302
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RD3
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
ACJ53360
UniProt:
B7GNK4
LinkDB
All DBs
Position
complement(2553101..2556034)
Genome browser
AA seq
977 aa
AA seq
DB search
MPTDNREGFVNDGTDNSTVSNADSAAAVNAAPAAASQPAEPVRRRRGGRRVVRGTGAAGA
SLELQVQERTPLFEAPALPDAGTAADSSDSDESSDSKDSAERPTRRRTRRAASTVVDSYS
EDDRPRRSRRTVSVDDFDDDDAPRSRRRSVADDNDYDEDRPVRRRSRRASMDMDDDDEDR
PVRSRSRRAVADTHEDTPDERLFDAVESLPSGHETMRRGKPMTSLLFQEPVLPAAVDAHD
TADTRDDDVDADERPSRRSRRSRSHDDDDAQPRSRRRDDRDDRGRNAAAGDANASANADH
DDFDSNDASDSRRSRRSRRLNAQERRAAAEVEQIEEDLELDDIAYSPIAEEEGDEESDAI
RTRSRRRRRRGSRGETGANGEHDTAENDAEDTRSRRRDDRDDHDRDRDEDDEEQTVTRRR
RRRRGGKNGEGTDDQSQNSEQPLVRRSRKQQYIDEITDVEGSTRLEAKKQRRRDNRRERS
RQSQLMEQDFLARRENVDRLMVVREKEQHTQISVVEDNVLVEHYVSDIQEVQTVGNIYLG
RVQNVLPSMEAAFVDIGQARNGVLYAGEVNWDAARLEGQPRRIELAFKSGDPVLVQVTKD
PIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERSRLKNIVSKIAPKDMGVIIR
TAAEGASEDAIVKDLESLVRQWERINAKREEFWHGKRPKLLQGEPDVAIRVVRDIFNDDF
SKLIVEGDKVYGRIEEYLDTMAPDLKDKLEKWDPAEHEGKDVFDKWSIDSQLRKGMERQV
YLPSGGSIVIDRTEAMTTIDVNTGRFIGKGKSLEETVTRCNLEASEEIARQLRLRDIGGM
VMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSE
ECPTCKGRGFILHDQPTVSADYDDPYALRGGDPFVKTNKHGRGTAPAPEPAGSSADVKAK
LAQIAAAAVAANNTAEE
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
gtgcccactgataaccgtgaaggtttcgtcaacgacggaaccgataattcaaccgtatcc
aatgccgattcggctgcagccgtgaacgctgcgcctgccgccgcctcccagcccgccgaa
cctgttcgccgtcgtcgcggcggccgtcgcgtggttcgcggcaccggtgctgccggcgct
tctctggaactgcaagtgcaggaacgcaccccgctgttcgaagcccccgcgcttcccgat
gccggcactgcggccgattccagcgattccgatgaatccagcgattccaaggattccgcc
gaacgcccaacccgtcgccgtacgcgccgcgccgcttccacagtggtcgactcgtatagc
gaggatgatcgtcctcgtcgttcgcgccgcactgtcagtgtcgatgatttcgatgacgat
gacgccccacgttcccgtcgccgttcggttgcggacgataacgattacgacgaggaccgc
ccggttcgccgccgctctcgccgtgcatctatggatatggatgatgatgacgaggaccgc
ccggttcgctcccgctctcgccgtgcagttgcggatacgcacgaggacaccccggatgag
cgcctgttcgatgcggtcgaatccctgccctctggccacgagaccatgcgccgcggcaag
ccgatgacgtccctgctcttccaggaaccggtactgcccgccgctgtggatgcgcacgat
accgctgacactcgtgatgacgatgttgacgccgacgaacgtccgtctcgtcgctcccgc
cgctcgcgcagccacgatgatgacgacgcgcagccgcgcagccgccgccgtgacgaccgt
gacgatcgtggccgcaacgctgccgccggtgacgccaatgccagcgccaacgcggaccat
gatgatttcgattccaatgacgcttccgactctcgccgttcccgtcgctcccgccgcctg
aacgcccaggagcgccgtgcagccgccgaagtcgagcagattgaggaagacctcgagctg
gacgatatcgcctactcgccgattgccgaagaggagggcgacgaagaatccgacgccatc
cgcacccgttcgcgccgtcgccgccgtcgcggctcacgcggcgaaaccggtgccaacggc
gagcacgataccgccgagaacgatgccgaggatacgcgttcccgccgtcgtgacgatcgc
gatgatcatgaccgtgatcgcgatgaggacgatgaggagcagaccgtcactcgccgtcgc
cgccgccgtcgtggcggcaagaacggcgagggcaccgacgaccagagtcagaacagcgaa
cagccgctggtccgccgctcccgcaagcagcagtacatcgacgagatcactgatgtggag
ggctccactcgtctcgaggccaagaagcaacgccgccgtgacaaccgtcgtgagcgcagc
cgccagagccagctcatggagcaggacttcctcgcacgccgcgagaacgtggaccgcctg
atggtggtgcgtgagaaggaacagcacacccagatttccgtggtggaagacaatgttttg
gtcgagcattacgtctccgacattcaggaagtacagaccgtcggcaacatctatcttggc
cgcgtgcagaacgtgctgcccagcatggaggccgcattcgtggatatcggccaggcccgc
aacggcgtgctctacgccggcgaggtcaactgggatgccgctcgtctcgaaggccagccg
cgccgcatcgagctggcgttcaagtccggcgacccggtgctcgtgcaggtcactaaggac
ccgatcggccacaagggtgcccgcctgacctctcaggtcacgctcgccggccgcttcctg
gtgctcgtgccatccggcggcatgaccggcgtgagtcgcaagctttcggagcgcgaacgc
agccgtctgaagaacatcgtctccaagatcgccccgaaagacatgggcgtgatcatccgc
accgcagccgagggcgcatccgaagacgccatcgtcaaggatctcgaatcactggtccgc
cagtgggagcgcatcaacgccaagcgcgaggaattctggcacggcaagcgcccgaagctc
ctgcagggcgagcccgacgtggccatccgcgtggtgcgcgacatcttcaacgacgacttc
agcaagctcatcgtggaaggtgacaaggtctacggccgcatcgaggaatacctggacacc
atggcccccgacttgaaggacaagctggagaagtgggacccggccgagcatgaaggcaag
gacgtgttcgacaagtggtccatcgactcccagctgcgtaagggcatggagcgtcaggtt
tacctgccgtccggcggctcgatcgtcatcgaccgcaccgaagccatgaccaccatcgac
gtgaacaccggacgctttatcggcaagggcaagtccttggaggaaacggtgacgcgctgc
aacctggaggcgtccgaagagatcgcccgccagctgcgcctgcgcgatatcggtggcatg
gtgatgatcgattacgtcgacatggtcatgcccgccaaccgcgatttggtgctgcgccgc
ttggtcgaatgcctggcacgcgaccgcaccaagcatcaggtggccgaagtcacctcgctt
ggtttggtgcagatgacccgcaagcgcatcggccagggtctggtcgaggcgttctccgag
gaatgcccgacctgcaagggccgtggtttcatcctgcatgatcagccgaccgtttcggcc
gactacgacgatccctacgcgcttcgcggtggcgacccgttcgtcaaaaccaacaagcac
ggtcgcggcaccgctcccgctcccgaaccggctggttccagcgctgacgtcaaagccaaa
ctggctcagattgccgccgctgccgtcgctgccaacaacacggcggaagagtaa
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