Bifidobacterium longum NCC2705: BL1083
Help
Entry
BL1083 CDS
T00094
Name
(GenBank) excinuclease ABC subunit A-like protein
KO
K03701
excinuclease ABC subunit A
Organism
blo
Bifidobacterium longum NCC2705
Pathway
blo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
blo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BL1083
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
blo03400
]
BL1083
DNA repair and recombination proteins [BR:
blo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BL1083
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BL1083
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_DNA-bind
nSTAND1
AAA_25
AAA_16
AAA_21
SMC_N
DnaJ_CXXCXGXG
ATPase
BCA_ABC_TP_C
AAA_29
DUF7577
DUF463
Anti-TRAP
T2SSE
RecA
MobB
DUF7351
RNase_E_G_Thio
DUF4350
Lar_restr_allev
Zot
HUTI_composite_bact
Motif
Other DBs
NCBI-ProteinID:
AAN24891
UniProt:
Q8G5D1
LinkDB
All DBs
Position
complement(914658..917255)
Genome browser
AA seq
865 aa
AA seq
DB search
MPSMSDDQRPQAIEVRGARVHNLKNIDIDIPLGELVGVAGVSGSGKSSLALGVLYAEGSR
RYLEALSTYTRRRLTQASRAQVDEVLHVPAALALHQRPTVPGIRSTFGTMTELLNSLRLL
FSRVASHVCPHCGARNESTLNVAAGLPITCAGCGKEFHAPGAESLAFNSAGACPTCSGTG
IVREVNRAALVPDESKSIDDGAVLPWGSLMWDLMKQVCGAMGVRTNVPFNELTPEERDIV
FNGPAVKKHILYKPKKGDDFAELDFTYFNAVYTVENALAKAKDEKGLKRVARFLKEGPCA
DCGGTRLSAAARAPHVRGLNLAEASAMTLDAAVDWVRGVPESLSADMRPMATNICESFLD
VARRLLDLGLGYLALDRAGATLSTGERQRVQLARAVRNRTTGVLYVLDEPSIGLHPSNVD
GLLGVMHDLVADGNSVVVVDHDVRVLKAADHLIEMGPVAGAEGGHVIAQGTVGEVAANPS
SRIAPFLADNVSARIRERVAEPQVFDLGRIRMTTSQLHTVKPLDVDIPRGRLVAVTGVSG
SGKTTMVLESLIPALKAQAAGERLPEHVRELEAEGIHRANLIDATPIGANVRSTVATYAD
IHDELRRAFARTDGAKAGGWKAGDFSYNTGRLRCPTCDGTGSISLDVQFLPDVTIECPDC
GGSRYASEADAIRRAVKAAKGKAAKMKVPDKRKAAKEKLSEATDQGGGNISLSLPQLMAM
SVDQALSVTGDLKKVHARLTTLHDLGLGYLTLGEPTPALSGGEAQRLKLASEMGKAQSDA
VFVFDEPTIGLHPFDVRVLLGVFDRLVASGATVVVIEHDLDVIANADWIIDMGPGGGESG
GRIVATGTPEQIAANPNSITGRYLR
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
gtgccgagcatgagcgacgatcaacggccgcaggcgatcgaagtgcgcggggcgcgcgtg
cataacctgaagaacatcgacatcgacattccgctgggcgaactggtgggcgtggccggc
gtctccggttcgggaaagagctcgctggcgctcggcgtgctgtatgcggaaggttcgcgg
cgctacttggaggcgctgtccacgtacacgcgacgccgcctgacccaggccagtcgcgcc
caggtggacgaagtgctgcacgtgccggccgcgctggccctgcaccagcggcccacggtg
cctggcatccgttcgacgttcggcacgatgaccgaattgctcaacagcctgcgactcctg
ttctcccgcgtcgcctcgcacgtgtgcccgcattgcggggcgcgcaacgagtcgacgctg
aacgtggcggccggactgcccatcacctgtgctggctgcggcaaggaattccacgcgccc
ggcgccgaatcgctcgctttcaactcggccggcgcctgcccgacctgctccggcaccggc
attgtgcgcgaagtaaaccgcgcggccctggtcccggacgagtcgaaaagcatcgacgac
ggcgcggtgctgccatggggttcgctcatgtgggacctcatgaaacaggtgtgcggcgcg
atgggcgtgcgcaccaacgtgccgttcaacgaactcacacccgaagaacgcgacatcgta
ttcaacgggccggccgtcaaaaagcatattctttacaagccgaagaaaggcgacgatttc
gccgaactcgatttcacctacttcaacgccgtatacacggtggagaacgcgctcgccaaa
gccaaggacgagaaaggtctgaagcgcgtggctcgatttctcaaggagggaccatgcgcc
gactgtggcggcacacgactgagcgccgcagcccgggccccgcatgtgcgcgggctgaac
ctggccgaagccagcgcgatgaccttggatgcggcggtggattgggtgcgcggcgtgccg
gaatctctgtccgccgacatgcggccgatggccaccaacatctgcgaatcattcctggac
gtggcccgccgactgttggatctgggcctcggctatctggcgcttgaccgcgccggtgcc
acgctttcaaccggtgaacgccagcgtgtgcagctcgcccgtgccgtgcgcaaccgcacc
accggcgtgctgtatgtgctcgacgagccgtccattggcctgcacccctcgaacgtggat
gggctgctcggcgtgatgcatgacttggtggcggacggcaattccgtggtggtcgtggac
catgacgtgcgcgtgctcaaggccgccgaccatcttatcgaaatgggaccggttgccggc
gccgaaggagggcatgtgatcgcgcaagggacggtcggcgaggtggcggcgaatccaagt
agtcgtattgcgccgttcttggccgataatgtgagcgcgcgcatccgtgagcgcgtggcg
gaaccgcaggtgttcgaccttggccgcatccgcatgacaaccagccagttgcatacggtc
aagccgctggacgttgatattccgcgcggccggctcgtggcggtgacaggcgtctccggc
tccggtaaaaccacgatggtgctcgaatcgctgattcccgcgctcaaagcgcaggcggcg
ggggagcggttgccggaacatgtgcgtgaacttgaggccgagggcatccatcgtgcgaat
ctcatcgacgccacgccgattggcgcaaacgtacgctccaccgtggccacctatgccgat
attcacgacgaattgcgccgcgccttcgcccgcacggacggcgccaaggcgggcggctgg
aaggctggcgatttctcatacaacaccggccgactgcgttgccccacatgcgacggcacc
ggttcaatctcgctcgatgtgcagttcctgccggacgtgaccatcgaatgcccggattgt
ggaggctcccgctatgcgtccgaagccgacgcgattcggcgtgcggttaaagcggctaag
ggcaaagcggcgaagatgaaggtcccggataaacgcaaagctgccaaggaaaaattgagt
gaggcgacggatcagggtggcggcaacatttccctgagcctgcctcaactcatggcaatg
agcgtggaccaggcgctgtccgtgaccggcgacctcaagaaggttcacgcacgtctgacc
accctgcacgacttgggcctcggctacttgacgctcggcgaaccgacgccggcgctttcg
ggcggcgaagcccagcggctgaaactcgccagtgaaatgggcaaggcccaatcggacgcg
gtattcgtgttcgatgagccgaccatcggtctgcacccgttcgacgtgcgcgtgctgctg
ggcgtgttcgaccggctcgtggcgagcggcgcaacagtcgtggtcatcgaacatgacctt
gacgtgatcgccaatgcggactggatcatcgacatgggtccgggcggtggcgaaagcggc
ggacgcatcgtcgccaccggaacgccggaacaaatcgcggccaatccgaacagcatcacc
gggcggtatctgcgctga
DBGET
integrated database retrieval system
