Bifidobacterium longum NCC2705: BL1196
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Entry
BL1196 CDS
T00094
Name
(GenBank) widely conserved ATP-dependent DNA helicase; Rep-like protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
blo
Bifidobacterium longum NCC2705
Pathway
blo03420
Nucleotide excision repair
blo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
blo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BL1196
03430 Mismatch repair
BL1196
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
blo03400
]
BL1196
Enzymes [BR:
blo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BL1196
DNA repair and recombination proteins [BR:
blo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BL1196
MMR (mismatch excision repair)
Other MMR factors
BL1196
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
DEAD
Motif
Other DBs
NCBI-ProteinID:
AAN25001
UniProt:
Q8G524
LinkDB
All DBs
Position
complement(1055728..1059759)
Genome browser
AA seq
1343 aa
AA seq
DB search
MSTFTPSAEQAAIIDAPVDADVLVVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTR
KAAGELLERVSAAVAGDMAGSTTATVSDRAFLKPAIFTYDAFFQTIVRQYGLLVGFDQNT
QPLSAAGALQLATEVIDSHMDLAFSEDFGAFSSLANRVLALSDAIGSAMIGAGCTSFDDA
INRVRQWDSAFINRLQQAVADEPMPEDEPKIPKIKRLKKDTDASWQAKLDDRAEHLHARC
TYHCGALLETTRKRDILLQLVEAYAQAKRERNMAEFSDFTIAAYQLIERFPSIGERTRRR
YSHVLLDEYQDTSTTQAALLAALFHVDASQRSAVNAVGDPFQSIYAWRGASPGAFRMFQQ
DFHLSAGYKPFPLSVTRRNSRIVLEAANNLTLPLRSNPSRPSSSLMREVDVSSLDPMPDA
PEGTLGVLGFATAGQEIDAVVRFCKTAIARHRSAAEQQEQMPGEQKAPVAVLFRSKSHMP
EYQAALEQAGLTTFVVGYSALLERPEIRDLMALLHVAADHTDTGSLMRLLATPRFTMSAA
DLTMLARFAEEQNTEQRFQALVQAGLAQPDTPANEWAAVVREYRDQVANAVFLPDVLLRG
DLIKLLERLSAHGRNAITRAAVMLRQVHDAVGRPLGDVIRAGIEALDLDIDTVLAGVLHN
PQHRANPALAHMPMDAIVDLVDTYTQEIAAEQTPSLHGFITWVDHLASVEDEAASLPDAP
VDVELMTVHQSKGLEWDAVAVVGLTAVGFPSNQGDHLKIVLDEHHTGGTEQGHWTAPEYH
ETADSWLTNPTAVPVPMRADAGILPRFPHDADVEADPIASLAALDDVELIDDEVFGSMRE
FGDGVEEVDASGWYLTQAEEYGRRLHADERRLMYVALTRAREDALMTYCAYTGESGRDPS
VVPKGSRAAQPSNFWLEVHDALQAREHAISAQDCVERLQAANAGKPMLISAQGEAIATPE
GFFIGEHAAAYGDAVVGEAWQTPITQTDAAVELPWPATLSDAVHEQLSRGIDVIAADSSS
LEQHQDAGPLLQRAQLLVDDADLMADAASGQSLDEAVKAKAQRILAVGRQNVTSLQARVG
GMSEREERLYWRSIIRPIPRISSPAAEAGTQFHAWAEQFINAGKPDEAVLAYEAESSMPH
TGQDAGFVSREAMLADLAERERQCRKPSTRQPAVPQPTAQQSASAVSAASATSISSDNAT
ESKLVAWQRRLAESSWAKRIPAWTERAIVVDVPGVGLVNGKLDAVFIGGLDPSSTTARFT
VVDWKTGRRPTKPDDITRKLAQLDMYRLLLAAVEGVELDSIDATLYYVSEPDEGLRELHA
RAKTKQEILTELSSGIPEQSDND
NT seq
4032 nt
NT seq
+upstream
nt +downstream
nt
atgagcacgttcactcccagtgcggaacaggccgccatcatcgatgcgccagtcgatgct
gacgtattggtggttgccggtgccggttccggcaaaacctttacgatgacccaacgcatc
atcgcgcttatcaatcgaggtgtggcacctgaacgcatccttggcctgaccttcacacgc
aaggccgcaggcgaactgctggaacgcgtctccgccgcagtggccggtgatatggcgggc
tctacgaccgccacggtgtctgatcgggcattcctcaagccggccattttcacgtatgac
gccttcttccagaccatcgtgcgccaatatggactgcttgtcggattcgatcagaacacg
caaccattgagcgcagccggagcgcttcaactggccaccgaagtcatcgacagtcacatg
gatctggcgttcagtgaggattttggcgccttctccagtttggcgaaccgtgttctggcg
ttgtcggatgccattggcagtgccatgatcggtgccggctgcaccagcttcgatgatgcg
atcaatcgagtacggcaatgggattcggcattcatcaatcgattgcaacaagccgttgca
gacgaacccatgcccgaggacgagccgaaaatccccaagatcaaacgactgaagaaagat
accgacgccagctggcaagccaagctcgatgaccgtgccgaacatttgcacgcccgctgc
acctatcattgcggtgcgctgctggagaccacacgcaaacgcgatattctgctccagctg
gtggaggcctatgcccaagccaagcgggaacgcaatatggccgaattctccgacttcacc
attgccgcgtatcagcttatcgagcgcttcccctccatcggagagcgtacgcgccgcagg
tacagccacgtgctgctcgacgaatatcaggacacctccaccacgcaggccgctctgctg
gcagcactgttccacgtggatgcgtcacagaggtccgccgtcaacgcggtgggtgatccg
ttccagtcgatttacgcatggcgtggtgccagccctggtgcattccgtatgttccagcaa
gatttccacctgtctgccggatacaagccattcccgctgtccgtcaccaggcgaaacagc
cgtatagtgctcgaagccgccaataatctcacgctgccgttgcgctccaatccgtcgcgt
ccttccagctcattgatgcgtgaggtcgatgtctcatcgctcgaccccatgcctgatgcc
cccgaaggaacattgggagtactgggcttcgccacggccgggcaggagatcgacgccgta
gtgcgtttctgcaagacggccatcgcacggcaccgttccgcagccgaacaacaggaacag
atgccgggcgaacagaaagcgccggtcgccgtgctgtttcggtccaaatcacatatgccc
gaatatcaggcggcattggaacaggccggattgaccacattcgtggtcggctattccgcg
ctgttggaacgtccggaaatccgcgatctgatggcgttgctgcacgtggccgccgaccac
accgatacgggatcgctgatgcgcttgctggccacgccacgattcaccatgtccgcagcg
gatttgaccatgttggcccgttttgctgaagaacagaacacggaacaacgcttccaagca
ttggtgcaggccggccttgcccaaccggatacaccagcgaatgaatgggcggctgtggtg
cgtgagtaccgcgatcaggtggccaatgcggtattcctgccagacgtattgctacgcggc
gacctgataaaactgcttgaacggttgagcgcacacgggcgcaacgccataacccgggcc
gcggtgatgctccgtcaggtgcatgatgccgtcgggcggccactgggcgacgtgattcgc
gccggcatagaagcgttggatcttgacatcgacaccgtattggccggtgtgctgcataat
ccgcagcaccgcgccaatcccgctttggcgcatatgcctatggatgcgattgtggatttg
gtggatacgtacacgcaagagattgccgctgagcaaactccctcgttgcatgggttcatc
acatgggtggatcatctggcttcggtggaggatgaagccgccagtctccctgacgctccg
gtggatgtggaactgatgaccgtacaccagtccaaagggttggaatgggatgccgttgcg
gtagtggggcttaccgccgtcggattccccagcaatcagggcgaccatctcaagatcgtg
ctggacgagcaccatacgggaggcaccgagcaaggtcactggaccgcacccgaatatcat
gagaccgccgactcctggctcaccaaccccaccgccgtacccgtgcctatgcgtgccgat
gccggcattctgccgcgattcccccatgatgccgatgtggaagccgaccccatcgcatcg
ttggcggctttggatgatgtggagcttattgatgatgaagtgttcggctccatgcgcgaa
ttcggcgatggcgtggaagaagtggatgcatccggctggtatttgacgcaggcggaggaa
tatgggcgccggctgcatgccgacgaacgtcgattgatgtatgtggcgcttacccgtgcg
cgagaagatgccctgatgacctattgcgcctatacgggcgaatccgggcgggacccgtca
gtggtgcccaaaggctctcgcgccgctcagccatccaatttctggcttgaagtgcatgac
gcgctccaagcccgtgaacatgcgatatcggctcaggactgtgtggaacggctgcaagcc
gccaatgccgggaagcccatgctgatctcggcgcaaggcgaagcgattgccactcccgaa
gggttctttatcggagagcatgccgcggcatacggtgacgccgtggtgggggaggcatgg
cagacgccgattacgcagacggatgccgctgtcgaattgccgtggccggctaccctcagc
gacgcagtgcatgaacagctgtcacgtggcatcgatgttatcgccgcagattcctcgtca
cttgagcagcaccaagacgccggtccactgctgcaacgggcgcaattgctggtggacgac
gccgatttgatggccgatgccgccagcggccagtcgcttgatgaggcagtcaaagccaag
gcgcaacgcattctggccgtcggacgtcagaacgtgacaagcctgcaagcccgcgtaggt
ggcatgagcgaacgggaggagcgcctctactggcgtagcattatccgtccgattccacga
atatcgtctccggcggccgaagccggcacgcagttccatgcgtgggctgagcaattcatc
aatgccggtaagccggatgaagcggtactggcatatgaagccgaatcaagtatgccgcat
acaggtcaggatgcgggattcgtttcccgggaagccatgttggccgatttggccgaacgg
gagcggcaatgccgcaagccatccacacggcagcccgctgtcccacagcccacggctcaa
caatccgcatccgccgtatccgccgcctccgccacttccataagtagcgacaatgccacc
gagtccaagctggtggcgtggcagcgcagactggccgaatcatcgtgggccaagcgcatc
ccggcgtggacggagcgtgccattgtcgtggacgtgccgggcgtgggcctagtcaatggc
aaactcgatgcggtattcatcggtggacttgacccgtccagcaccaccgcacgctttacc
gtggtcgactggaaaaccggtcgtcggcccaccaagccagacgacatcacccgcaaactt
gcccagctcgacatgtaccgactgctgctggcagcggtcgaaggtgtggaattggacagt
atcgacgccactctctactatgtcagtgagcccgacgagggcttgcgcgagcttcacgcc
cgtgcgaaaaccaaacaggaaatccttaccgagttgagctccggcattcccgaacaatct
gacaacgactga
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integrated database retrieval system
