Bifidobacterium longum NCC2705: BL1546
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Entry
BL1546 CDS
T00094
Symbol
pnpA
Name
(GenBank) PnpA
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
blo
Bifidobacterium longum NCC2705
Pathway
blo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
blo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BL1546 (pnpA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
blo03019
]
BL1546 (pnpA)
03016 Transfer RNA biogenesis [BR:
blo03016
]
BL1546 (pnpA)
Enzymes [BR:
blo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
BL1546 (pnpA)
Messenger RNA biogenesis [BR:
blo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BL1546 (pnpA)
Transfer RNA biogenesis [BR:
blo03016
]
Prokaryotic type
tRNA degradation factors
BL1546 (pnpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH_2
PCB_OB
DUF1773
S1_2
Motif
Other DBs
NCBI-ProteinID:
AAN25338
UniProt:
Q8G447
LinkDB
All DBs
Position
1951981..1954722
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AA seq
913 aa
AA seq
DB search
MEGPEIKAVEAVIDNGSFGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKE
NYDFFPLTVDVEEKMYAAGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQ
VVETVLAVNPDDAYDVIALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERER
AVFEIVVAGRVIENGDVAIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKV
ICEAQDELKKIAAKETKEFQLFPEYTDELYARIDEIAHKDLDEALSIAEKLPRQDRIHEI
KEHVREVLADEFTDMDDAEKDKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSA
EVDIVPRVHGSALFQRGETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGE
TGRVGSPKRREIGHGALAEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLS
LLAAGVPLKAPVAGIAMGLVSGDVDGKHIFKTLTDILGAEDAFGDMDFKVAGTSEFITAL
QLDTKLDGIPADILAAALQQAKEARATILEVINECIDGPAEMSEFAPRIITTSVPVEKIG
EVIGPKGKMINQIQEDTGAEIAIEDDGTVFISSEGGEAAEKAKAIIDQIANPHVPEAGET
YNGKVVKTTSFGAFVNLTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVIVQGVD
DRGKISLAIPGFEDQENNARPSRGDRDDRRGGRGRGDRDDRRGGRGRRSERDDRDFDDRD
DRPRRRRSDDFEDDYDDRPRRRRSDDRDFDRDDRDDDRPRRRRSADRDFDDRDDRDARDS
RDDDRPRRRRSSDRDDRGDRDDRRGGSRGRGRGSDRNPRYATDDNYDDYRADREERTERP
RRRVRRDFDPFED
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atggagggtcccgaaatcaaggccgttgaggccgtaatcgacaatggatcgtttggtaag
cgcacgctgcgcttcgagaccggccgcctcgcccagcaggccgatggcgctgtggccgcc
tacctcgacgacgattccatgattctgtccaccaccaccgccggttccagcccgaaggag
aactacgacttcttcccgctgaccgttgatgttgaagagaagatgtacgctgccggcaag
attccgggctcgttcttccgccgtgaaggccgcccgagctccgaggccatcctcgcctgc
cgcatcatcgaccgcccgctgcgcccgctgttcccgcacaccctgcgcaacgaagtgcag
gtcgtcgagaccgtgctcgccgtgaaccctgatgacgcttacgatgtcatcgccctgaac
gccgcttccgcctccactatgatctccggcctgccgttcgaaggcccggtctccggtgtg
cgtctggcgctgatcgacggccagtgggtcgccttcccgcgttggagtgagcgtgagcgc
gccgtgttcgagattgtggtcgctggccgcgtgatcgagaacggtgatgttgccatcgcc
atgatcgaggcgggtgccggcaagaacgcctggcacctcatctatgacgagggtcagacc
aagcccgatgaggaggtcgtggccggtggtcttgaagccgccaagccgttcatcaaggtg
atctgcgaggctcaggatgagctcaagaagatcgccgccaaggagaccaaggaattccag
ctcttcccggagtacaccgacgagctgtatgcccgtatcgacgagatcgctcacaaggat
ctggacgaggcgctctccatcgccgagaagctgccgcgtcaggatcgcatccacgagatc
aaggagcacgtgcgcgaggtgctcgcggacgagttcaccgatatggacgatgccgagaag
gacaaggaactcggtaacgccttcaaggaactgcagcgccagattgtgcgtcgccgcatc
ctgaccgaggactaccgcatcgacggccgtggcctgcgcgacatccgcaccctgtccgcc
gaggtggacattgtgcctcgcgtgcacggttccgccctgttccagcgtggcgagacccag
attctgggcgtcaccacgctgaacatgctcaagatggagcagcagatcgacgcgctgtcc
ggtccgcagtccaagcgttacatgcacaactacgagatgccgccgtactccactggtgag
accggccgcgtcggttccccgaagcgccgcgaaatcggccacggcgccctcgccgagaag
gctctcgtgccggtgctgccgagccgcgaagagttcccctacgccatccgacaggtctcc
gaggccatcggttccaacggttccacttcgatgggttccgtgtgcgcctccacgctgagc
cttttggctgccggcgtgccgctgaaggctccggttgccggcatcgccatgggcctcgtg
tccggcgacgttgatggcaagcacatcttcaagaccctcaccgatattctgggtgccgag
gatgccttcggcgacatggacttcaaggtggccggtacttccgagttcatcaccgccctg
cagctcgacaccaagctcgacggcatccccgccgacatcctggccgccgctctgcagcag
gccaaggaagcccgcgccacgattctcgaggtcatcaacgagtgcatcgacggcccggcc
gagatgagcgagttcgctccgcgcatcatcaccacctccgtcccggttgagaagatcggc
gaagtcatcggcccgaagggcaagatgatcaaccagattcaggaagacaccggcgctgaa
attgccatcgaggatgacggtaccgtcttcatctcctccgagggtggcgaggctgctgag
aaggccaaggccatcatcgaccagattgccaacccgcacgtgcccgaggccggcgaaacc
tacaacggcaaggtcgtcaagaccacgtcgttcggcgctttcgtgaacctcacccccggc
accgacggcctgctgcacatctcccagatccgcaacctggccaacggcgagcgtattgac
gctgtcgaagacgtgctcaaggaaggcgacaccgttgaggtgatcgttcagggtgtcgat
gatcgcggcaagatctccctggccattcctggtttcgaggatcaggagaacaacgcccgc
ccgagccgtggcgatcgcgatgaccgccgtggcggccgtggccgtggtgaccgtgacgat
cgccgtggcggccgtggccgtcgctccgagcgcgatgaccgtgacttcgacgatcgtgac
gaccgtccgcgtcgccgtcgctccgatgacttcgaggatgattacgacgaccgtccgcgt
cgccgtcgctccgatgaccgtgacttcgatcgcgatgatcgcgatgatgatcgtccgcgt
cgccgtcgttctgccgaccgtgacttcgacgatcgcgatgaccgtgatgctcgcgactcc
cgtgacgatgatcgtccgcgtcgccgtcgctcttccgatcgcgatgaccgtggcgatcgt
gatgaccgccgtggcggttcccgtggccgtggccgtggctcggaccgtaacccgcgctac
gccaccgacgacaactacgacgactaccgcgccgaccgcgaagagcgtactgagcgcccg
cgtcgccgcgtccgtcgcgactttgatccgttcgaggactaa
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