Bifidobacterium longum subsp. infantis ATCC 15697 (Tokyo): BLIJ_0853
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Entry
BLIJ_0853 CDS
T02092
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
blon
Bifidobacterium longum subsp. infantis ATCC 15697 (Tokyo)
Brite
KEGG Orthology (KO) [BR:
blon00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
blon03019
]
BLIJ_0853
Enzymes [BR:
blon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BLIJ_0853
Messenger RNA biogenesis [BR:
blon03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BLIJ_0853
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
DEAD
Helicase_C
AAA_22
AAA_19
HA2_C
SLFN-g3_helicase
T2SSE
nSTAND3
AAA_30
ResIII
Zeta_toxin
NACHT
AAA_16
AAA_11
SRP54
TsaE
AAA_23
Motif
Other DBs
NCBI-ProteinID:
BAJ68445
UniProt:
B7GQ59
LinkDB
All DBs
Position
complement(984617..988753)
Genome browser
AA seq
1378 aa
AA seq
DB search
MKYEYPAELPVSAARDEIASAVKRSQVVIVSGQTGSGKTTQLPKILLELGRGTHGKQIVH
TQPRRIAARTVAERIASEMGVKLGDEVGYQVRFTDESSPSTRLRVVTDGILLAQIQRDPK
LTQYDTIIIDEAHERSLNIDFLLGYLTALLPQRRDLKLIITSATIDSVKFQEHFEHALHE
KVPVIEVSGRTFPVQVVYEPLGTAPALMREVPGFAVGARPGDADYDELASAIAESDSDRP
RGRSGDSYADDGITDMPTAVARACAELVIHSSHERGPRDILVFASGERDIHEFEAALRHH
YGPRADDMRRPDAIEIMPLFARLSAADQHKVFESHLHQRIVIATNVAETSLTVPGIRYVV
DPGSARISRYSKTAKVQRLPIEPISQASADQRSGRCGRVADGIAIRLYSREDYETRPRFT
EPEILRTSLGAVVLHMLSVGVARTAEDVTNFGFIDPPDMKAVSDGFNELTELKAIGRKRG
EVTLTHTGRQLARIPIDVRLGRMVIEAAKTGSPNLLAQVLVVVAFLSLQDPRERPDDKRE
DADRIHNRYADETSDFLTALNIWDRVFQADGDPSNNALRRICKTEYLSWLRIRQWKDLVS
QLRQMCRELRFKVGDPLPASRPGLEIRQMPLNQQAAHSLCCSWDADGIHKSMLAGLLSMM
GMQVVREPKASDFAGLTGAARARAMKRAQKQSKNDYQGARGTRFALFPASAVAKKTPSWV
MSTELVETSRLWARYSAAIDPTWAEPLAGQLTRTTYAEPHWSGSRGSAVATARVLLYGLP
IVQDRAVQWGRINPLEARDFLIRQGLVEGDIQQRFSYDDFVGKNRDILEDAADDASRTRQ
LADTVSDEDLFDFYNAVIPNDVTSVADLAKWWKSEHDRQPNLLDFDPAKVERLASSDSVS
LDDYPDHWHTTGSDGQPIDLRLSYVYDPADPADGVTVHVPLKALSRITPDQFTWNVPGLL
DELILSMIKALPKQLRVQFVPAPDAARAIRDWIDEHYPDLPGSGSQQKPNLPPVDEDGTT
VGWPDLAHVFTKAAIATKGAQIHPEVLGPELVERLSPYLRVTFSVEQQLPAGKHPRGRRH
ARGPVKVLGVSKDLKALQRKFAAQAEASARQMVKKQADQAGEQGKLVSQANLLHKAGATT
ESRATMLWRGALDALRLPAERISSRWLGTEALMLASAPYKSTKDLVEDLQLATVKRLMPN
VDRLSDDEALANAVLDVREVYEDTVYQVAHDVIAVLKAYAEVDKATGGKADLPMLSVLQS
VREHIATLVFPGFVGRTPPDALANISRYLQADLMRLAKAKTDKNRDVRWAWEADEARTLV
DKAMAKAKAEPAGPRHETLMKQATAARWMLEEFYVSLWAQELGTAKPVSLQRIKKALA
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atgaaatatgagtatcctgcagaacttcccgtatctgccgcgcgtgatgagatagccagc
gcggtcaaacgttcccaagtcgttattgtgtccggccagaccggttcgggcaaaaccaca
cagctgccgaaaatcctgcttgagcttggccgtggcacgcacggcaagcagatcgtgcac
acccagcctcgccgcatcgccgcgcgtacggtggccgaacgtatcgcctcggagatgggc
gtgaagctcggtgacgaggtcggctatcaggtgcgtttcaccgacgaaagctcgcccagc
acacgattgagggtcgtgaccgacggtattctgctcgcccagatccagcgcgatccgaaa
ctcacccaatacgatacgatcatcatcgacgaggcgcatgagcgcagtcttaacatcgac
tttctgctcggctatctgacggcactgctgcctcagcgccgcgatctgaagctcatcatt
acctccgcgaccatcgattcggtcaagttccaggagcatttcgagcacgccttgcatgag
aaggtgccggtaatcgaggtttccggccgcaccttccccgtgcaggtggtctatgagccg
cttggcaccgcgcccgcgttgatgcgcgaagtgccgggattcgcggtgggcgcccgcccc
ggcgacgccgattacgacgagctggccagcgccatcgcggaatccgattccgaccggccc
cgcggccggtccggcgactcctatgccgatgacggcatcaccgacatgcccacggccgtg
gctcgagcctgcgccgaactggtgatccactcctcccatgagcgcggtccccgcgatatt
ctggtcttcgcttccggcgagcgcgacatccacgagttcgaggccgcactgcggcatcat
tacggtccgcgcgccgacgacatgcgccgaccggacgccatcgagatcatgccgctgttc
gcgcgattgtccgccgccgaccagcacaaggtgttcgaatcgcatttgcatcagcgcatc
gtcatcgccaccaatgtggctgagacctcgctgaccgtgcccggtatccgctacgtggtg
gaccccggttccgcccgtatctcccggtattcgaagaccgcaaaggtccagcgtctgccg
atcgagccgatcagccaggccagtgccgaccagaggtccggccgatgcggccgcgtggcc
gacggcatcgcgatccgcctgtattcgcgtgaggattacgagacccgaccgcgcttcacg
gagccggaaatcctgcgtacctcgctgggtgccgtggtgcttcacatgctgtcggtgggc
gtggcccgcacggccgaggacgtcacgaacttcgggttcatcgatccgccggatatgaag
gccgtgtcggacggtttcaatgagctcaccgagctcaaggccatcggccgaaagcgcggc
gaggtgacgctcacccataccggccgtcagctggcgcgcatccccatcgacgtgcgtctg
ggacgtatggttatcgaggccgcgaaaaccggttcgccgaatcttctggcccaggtgctc
gtggtcgtggcgttcctgagcttgcaggacccacgtgaacgcccggacgacaagcgtgag
gatgccgaccgtatccacaaccgatatgcggatgagacttccgatttcctgacggccctg
aacatctgggaccgcgtgttccaggcggacggcgacccgagcaataacgcgctgcgccgt
atctgcaaaaccgagtatctcagctggctgaggatacgccagtggaaggatctcgtctcc
cagctacgccagatgtgccgggagctgcggttcaaggtcggcgacccgctgcccgcctcc
cgcccaggcttggagattcgccagatgccgttgaatcagcaggccgcgcattcgctgtgc
tgctcgtgggatgcggatggcatccacaagtcgatgctcgccggattgctgtcgatgatg
ggcatgcaggtggtgcgtgagcccaaggcatccgatttcgcggggctgaccggtgcggcg
cgcgcccgtgcgatgaaacgcgcccagaagcagtcgaagaacgattatcagggcgcgcgc
ggcacccgtttcgccctgttccccgcctccgccgtggccaagaagaccccgtcatgggtg
atgagcaccgaactggtggagacctctcgcctgtgggcccgctattcggcggccatcgac
ccgacgtgggccgaaccgctggccggccaattgacccgcaccacgtatgcggagccgcac
tggtcgggttcgcgtggctcggctgtggccaccgcgcgcgtgctgctgtatggtctgccg
atcgtacaggaccgtgccgtgcagtggggacgcatcaatccgcttgaggcgcgcgacttc
ctgattcgccagggtctggtcgagggcgatattcagcagcgtttcagttacgacgacttt
gtgggcaaaaaccgcgacattctcgaggatgccgccgatgatgcgagccgcactcgccag
ctggcggataccgtgtccgacgaggatctgttcgacttctacaacgcggtcattcccaac
gatgtgaccagcgtggccgatctggcgaaatggtggaagtccgagcatgaccgtcagccg
aatctgcttgatttcgacccggccaaggtggagcgtctggcatccagcgattcggtgagt
ctggacgattaccccgaccattggcatacgaccggatcggacggccaacccatcgacctg
cgtttgagctacgtgtacgatccggccgacccggccgacggcgtcaccgtgcatgtgccg
ttgaaggcgctctcgcgtatcacgcccgaccagttcacatggaatgtgccgggcctgttg
gatgagctgatcctgtcgatgatcaaggcgctgcccaagcagctgcgcgtccagttcgtg
ccggccccggatgccgcgcgtgcgattcgtgactggatcgacgagcattacccggatctg
ccgggctcgggctcgcagcagaagccgaatctgccgccggtggatgaggatggcacgacc
gttggctggcccgatctggcacatgtgttcaccaaggcggccatcgccaccaagggtgcg
cagattcatcccgaagtgttggggccggaactggtcgagcgtctttccccgtatctcagg
gtcacgttctcggtggagcagcaactgccggccggcaagcaccctcgtggacgccggcat
gcgcgcggccccgtcaaggtgctgggtgtatccaaggatctgaaggcgctgcaacgcaag
ttcgccgcgcaggcggaggcgtcggcccgtcaaatggtcaagaagcaggccgatcaggct
ggagagcagggcaagctggtcagtcaggcgaacctgttgcataaggcgggtgccaccacc
gagtcccgggccacgatgctctggcgtggcgcattggatgcgctgcggttgccggccgaa
cgcatttcgtcgcgctggctgggtaccgaggcgttgatgctggcttctgctccgtacaag
tccaccaaggatctggtcgaagacctgcagctggccacggtcaaacggctgatgccgaat
gtcgacaggctctcggacgatgaggcgttggccaatgcggtgctcgatgtgcgcgaagtg
tacgaggacaccgtctatcaggtggcgcatgacgtgatcgccgtgctcaaggcttatgcc
gaagtcgacaaggccactggcggcaaggccgacttgccgatgctgtcggtgctgcagtcg
gtgcgcgagcacatcgccacgctggtgttccccggattcgtcgggcgtactcccccggat
gcgctggcgaacatctcccgatacctgcaggccgatctcatgcgcctggccaaggcgaag
accgacaagaaccgcgacgtgcgatgggcgtgggaggccgacgaggcccgcacgctggtc
gacaaggcgatggccaaggccaaggcggagccggccggccctcgccacgagacgctgatg
aagcaggcgaccgccgcccgctggatgctcgaggaattctacgtgtccctgtgggcgcag
gaactcggcaccgccaagccggtgagcctgcagcgcatcaagaaggcgctggcgtag
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integrated database retrieval system
