Bifidobacterium longum subsp. infantis ATCC 15697 (Tokyo): BLIJ_2076
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Entry
BLIJ_2076 CDS
T02092
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
blon
Bifidobacterium longum subsp. infantis ATCC 15697 (Tokyo)
Pathway
blon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
blon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BLIJ_2076
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
blon03019
]
BLIJ_2076
03400 DNA repair and recombination proteins [BR:
blon03400
]
BLIJ_2076
Enzymes [BR:
blon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BLIJ_2076
Messenger RNA biogenesis [BR:
blon03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BLIJ_2076
DNA repair and recombination proteins [BR:
blon03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BLIJ_2076
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
HRDC
DEAD
RQC
RecQ_Zn_bind
ResIII
Rhodanese
Motif
Other DBs
NCBI-ProteinID:
BAJ69654
LinkDB
All DBs
Position
complement(2183306..2185171)
Genome browser
AA seq
621 aa
AA seq
DB search
MLAGRDVLGVMPTGAGKSVCYQIPAALSPGATLVISPLISLMRDQVDALNDLGLPAAFIN
TTQTPDEQAMVFAQAAAGQIKLLYVAPERLETGRFRDFAARTPISLIAVDEAHCVSQWGQ
DFRSSYLGIGDFIAGLPQRPPVGAFTATATERVRRDIVGLLGLRNPAVTVTGFDRSNLYF
DVVKLETKYKAAWVARYVADHTDESGIVYCATRKTTEALADTLNQMGHPAVAYHGGMSPD
AREAAQRDFITDKVPVVVATNAFGMGIDKSNVRYVIHHNLPESIEAYYQEAGRAGRDGEP
SRCTLLWNESDIVTRRRLLDNDYENERLTPEEQEIVRQSKRRLLDGMVGYCRTTDCLHRY
MTRYFGQELSSNAGSTAGEDIAADSSQSGRCGACSNCESTFETIDVTRVAQAISRCVHDV
GQRVGSGKIVKILRGSRAQDLAWLNPERMPTFGMLKDVNEARVRDVLSQMATDGYLSIAE
GRMPIVMFGARAAETAAPDFHYEIKRVERKSAAAGSGRSGGVADTADSANVPGDALGSYI
PDDDEESLFQKLRELRRTIAQEIGKPPYIVFSDKTLRDMARIKPVTNAQFLAVNGVGQHK
LDLYGQRFMQTVASFNAGSAS
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
ttgcttgccggacgcgatgtcttgggcgtgatgcccaccggcgcaggcaagtccgtgtgc
taccagattcccgccgcgctcagcccgggtgcgactttggtcatatctcccttgatttcc
ctgatgcgcgaccaggtcgatgcgctgaacgacctcggtctgccggccgcgttcatcaac
accactcaaactcccgacgagcaggcgatggtgttcgcccaagccgccgccggacagatc
aaactgctgtacgtggccccggaacgcttggaaaccgggcgattccgcgactttgccgcc
cgtacgccgatctcgctgatcgccgtggacgaagcccactgcgtctcccagtggggtcag
gacttccgctcgtcgtacttaggtatcggcgatttcatcgccgggctgccgcagcgtcca
ccggtgggtgcgttcaccgccaccgccaccgaacgggtgcgccgggacatcgtgggactg
ctgggattgcggaatccggccgtcaccgttaccggattcgaccggtcgaacctgtatttt
gatgtggtcaaactggagaccaaatacaaggccgcatgggtggcgcggtatgtggccgac
catacggacgaatccggcatcgtctactgcgccacccgcaagaccaccgaagcactcgcc
gacacgctgaaccagatggggcatccggctgtcgcctaccatggcggcatgtcgccggac
gcgcgtgaggcggcccagcgcgacttcatcaccgacaaggtgccggtggtcgtggccacc
aacgctttcggcatgggcatcgataagtccaacgtgcgttacgtcatccaccacaatctg
cccgaatccattgaggcctactatcaggaggccggccgcgcgggccgtgacggcgagccc
agccgatgcacgctgctgtggaatgagtcagacatcgtcacccggcgtcggttgctggat
aacgattatgagaacgagcgattgactcccgaagagcaggaaatcgttcgccagtccaag
cgccggctgctggacggtatggtcggctactgccgcaccaccgactgcctgcaccggtat
atgacccggtatttcggtcaggaattgtcgtcgaatgctggttccacggcgggtgaagac
attgcggcggactcttcgcagtccggcagatgcggtgcctgctcgaactgtgaaagcacg
ttcgagaccatcgacgtgacccgcgtggcgcaggcaatcagccgttgcgtgcatgacgtg
gggcagcgcgtcggttccggcaagatcgtcaagatcctgcgcggttcgcgggcacaggat
ctggcatggctgaacccggagcggatgcccaccttcggcatgctcaaggacgtgaacgag
gctcgcgttcgcgacgtgttgagccagatggccacggacggttacctgtcaatcgccgaa
gggcgtatgccaatcgtcatgttcggtgcgcgggcggccgaaaccgccgctcccgacttc
cactatgagatcaaacgggtggaacgcaagtcggcggcggccggttccggtcggagcggg
ggagtggctgatactgccgattccgccaatgttcccggcgatgcgctgggctcgtatatc
ccggacgatgacgaggaatcgctgttccagaagctacgcgaactgcgacgcaccatcgcc
caggaaatcggcaagccgccgtacatcgtgttctccgacaagaccttgcgcgacatggcc
cgcatcaagccggttaccaacgcgcaatttctggcggtcaacggcgtcggtcaacacaag
ctcgacctctacggccagcgcttcatgcaaaccgtcgcctcgttcaatgccgggagtgcg
tcataa
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