Salinivirga cyanobacteriivorans: L21SP5_01103
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Entry
L21SP5_01103 CDS
T04172
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
blq
Salinivirga cyanobacteriivorans
Pathway
blq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
blq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
L21SP5_01103 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
blq03021
]
L21SP5_01103 (rpoC)
03400 DNA repair and recombination proteins [BR:
blq03400
]
L21SP5_01103 (rpoC)
Enzymes [BR:
blq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
L21SP5_01103 (rpoC)
Transcription machinery [BR:
blq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
L21SP5_01103 (rpoC)
DNA repair and recombination proteins [BR:
blq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
L21SP5_01103 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
Biotin_lipoyl_2
Biotin_lipoyl
Motif
Other DBs
NCBI-ProteinID:
ALO14767
UniProt:
A0A0S2HXJ1
LinkDB
All DBs
Position
complement(1341638..1345909)
Genome browser
AA seq
1423 aa
AA seq
DB search
MAFRRDNKVKSDFTKVVVSLSSPEEILERSFGEVQKPETINYRTYKPERDGLFCERIFGP
VKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHINLVVPVAHIWYFRSLPNKI
GYLLGLPTKKLDSIIYYERYVVINPGVKKEDGIEYLDFLTEEEYLDILDSLPKENQYLED
TDPDKFIAKMGAEALNELLSQLDLDELSFSLRDKASKETSQQRKNEALKRLQVVEAFRAA
KGKNHPEWMIMKVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIKAP
EVILRNEKRMLQESVDSLIDNSRKSNAVKTDANRPLKSLSDSLKGKQGRFRQNLLGKRVD
YSARSVIVVGPELKMHECGLPKDMAAELYKPFVIRKLIERGIVKTVKSAKKIVDRRDPVV
WDILENVLRGHPVMLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLACTAFNADFDGDQMAV
HLPLGNEAILEAQMLMLGSHNILNPANGAPITVPSQDMVLGLYYITKEREGVKGEGLTFY
SPEEVKIAYNEEKVALHAGIKVRINLKQEDGSFKEEIIKTTVGRVLFNEVVPADAGYINE
LLTKKALRDIIGKIYKLSGTSVTAQFLDDIKDMGYRMSFKGGLSFNLDDVIIPEEKIKLV
KEGYAQADEVANNYNMGFITNNERYNQVIDIWTHTNASLTQILMKQLSTDNQGFNSVFMM
LDSGARGSKEQIRQLSGMRGLMAKPQKSGAAGAEIIENPILSNFKEGLSVLEYFISTHGA
RKGLADTALKTADAGYLTRRLVDVAQDVVVKENDCGTLRGLMATAIKKNQEVVETLYERI
LGRTALNDVYHPLSGDLMVGAGEIITEDIAAKIEESPLEQVEIRSVLTCEAKHGVCGKCY
GRNLATGRDVQIGESVGVIAAQSIGEPGTQLTLRTFHVGGTASNIAAESSIVAGYNGIAN
IDELRTVKYKDDSGTVNHIVIGRLGELRIIDENTELALSTHAIPYGAKIYIKDGDKVKKG
DLICEWDPYNAVIISEAEGSISFTNVIEGITFREEMDEQTGFREKVITETKDKTKNPMIK
VLNKDGEVTKMYNLPVGAHIAVEEGEKVKVGQAIVKIPRSAGKSGDITGGLPRVTELFEA
RNPSNPSVVAEIDGEVSFGKIKRGNREVIVKSKAGQTKKYLVSLSKQILVQENDYVRAGI
PLSDGAITPADILSVQGPTKVQEYIVNEVQEVYRMQGVKINDKHFEVIVRQMMRKVVIVD
PGDTKFLEKQEVDKIAFMEENNWIYGRKVVEEPGDSENLKMGQIVSLRQLREENSMLKRK
DMKLVEVRDAIPATSSQVLQGITKAALQTKSFISAASFQETTKVLNEAAIRAKEDALEGL
KENVIVGHKIPAGTGQRKFDDLLVGSKDEFDKLLESKKEAQKS
NT seq
4272 nt
NT seq
+upstream
nt +downstream
nt
atggcattcagaagggataataaagttaagagtgactttacaaaagtagtcgttagtttg
tcttcaccagaggaaattcttgaaaggtcttttggtgaagtacaaaaaccggaaacaatt
aattatcgtacctacaaaccagaaagagatggtttgttttgcgagcgtatttttggaccg
gtaaaagattacgaatgtcactgcggtaaatataaacgtatccgttataaaggcattgtc
tgtgatagatgtggtgtagaagttacagagaaaaaagtaagaagagagcgtatgggccac
atcaaccttgtggttccagttgcacatatctggtacttcagatcattgcccaataaaatc
ggttaccttcttggtctcccaaccaagaaactcgactccattatttactacgaacgttat
gtagtaattaatcccggagttaaaaaagaagatggtatagagtatctcgatttcctcaca
gaagaggaatatctcgatattctggattctcttccaaaagaaaatcaatatctagaagat
actgatcctgataagtttatcgctaaaatgggtgcagaagcactgaatgagttgctttcg
caacttgatttagatgaactgtcgttctcattgcgcgataaagccagtaaggagacttcg
caacagcgtaagaatgaggcgttgaaacgcttacaggtggtagaggcttttagagctgca
aaaggtaaaaatcatcctgaatggatgattatgaaggtaattccggtgattccaccagaa
ttaagaccactggttccacttgatggaggccgatttgctacatctgacctcaacgacttg
tatcgccgtgtaattattcgtaataaccgtctgaaaaggttgatcgaaattaaggcgccc
gaggtcattttacgtaacgagaaacgtatgttgcaggaatcggttgattcactgatagat
aattcaagaaaatccaatgcagttaaaactgatgccaatagaccactaaaatcacttagt
gatagtttgaagggaaaacagggacgtttccgtcagaatctacttggtaaacgtgtcgat
tactctgcacgttcagttattgttgttggacctgaattgaaaatgcatgaatgcggtctt
cctaaagatatggcagccgaattatacaaaccatttgtaattcgtaagcttattgaacgt
ggaattgttaagaccgtaaaatcagccaagaaaattgttgatcgcagagatcctgtggta
tgggatattcttgaaaatgtgttgcgcggtcatccggttatgcttaaccgtgcacctacg
cttcaccgccttggtattcaggcttttcagcccaagttaattgagggtaaggcaattcag
ttgcacccacttgcatgtactgcgtttaatgccgactttgacggtgaccaaatggcagtg
cacttacctcttggtaatgaagcaattcttgaagcgcaaatgttaatgcttggttcacac
aatatcctgaaccctgctaacggggcacctattacagtaccttcacaggatatggttctg
gggctctattacattaccaaagagcgcgaaggcgttaaaggagaaggactcactttttac
tcacctgaagaggtcaaaattgcttacaatgaggaaaaagttgcgcttcatgcaggtata
aaagtacgtatcaaccttaaacaggaagatggtagctttaaagaagaaattattaaaacc
actgtaggtcgtgtacttttcaatgaggttgtacctgccgacgctggttatattaacgaa
cttcttaccaaaaaggcgcttcgggatattattggtaaaatttataaactcagcggtaca
agtgttacagcccaattcctcgacgatatcaaggatatgggatacagaatgtcatttaaa
ggtggcttgtcgtttaaccttgatgatgtgattattcctgaggaaaaaattaaacttgtg
aaagagggttatgcccaggctgatgaagttgccaataactacaacatgggattcattaca
aataatgaacgatataaccaggttattgatatttggacacacaccaatgccagtttaact
caaattctgatgaagcaattgagcacagataatcagggtttcaactctgttttcatgatg
cttgactctggtgctcgtggttctaaagagcagattcgtcagctttctggtatgcgtggt
ctaatggctaaaccacaaaaaagtggtgctgctggagctgaaattattgagaacccgatt
ctttctaactttaaggaaggactatcagttcttgagtactttatctctactcacggtgcc
cgtaaaggtttggccgataccgcactcaaaacagccgatgctggttacctgacccgtcga
ttggttgatgttgcccaggatgtagtggtaaaagaaaatgattgtggtacactacgtggt
cttatggctacagcaatcaagaagaatcaggaggtagtggaaacactatacgaacgtatt
cttggtcgtactgcattaaacgatgtttatcatccgttgtcaggtgaccttatggtaggc
gctggcgaaattattaccgaagatatcgctgcaaaaattgaggaatcaccgctggagcag
gttgaaattcgttcagtattgacatgtgaagctaaacatggtgtttgtggaaaatgttac
ggtcgaaatcttgccacaggtagagatgtgcaaattggtgagtcggtaggtgttattgcc
gcacaatcaattggtgagcctggtacgcagcttacactacgtacattccacgttggtggt
acagcatccaatattgcagcagaatcaagcattgttgccggatataatggtattgcaaat
attgatgagcttcgtacagtaaaatataaagatgactcaggcactgtgaatcacattgtg
attggccgcctgggtgagctcagaattatagatgaaaatacagaattagccttaagtact
cacgctataccttatggtgcaaaaatttacatcaaggatggtgataaggtgaaaaaaggc
gatctgatctgtgaatgggatccatataatgcagttattatttcggaagcagagggtagt
atttcatttacaaatgtaattgaaggtattacattccgcgaagaaatggatgagcaaact
ggtttccgtgaaaaagtaattacagaaactaaagacaagaccaaaaaccccatgattaag
gtacttaataaagatggggaagttaccaagatgtataaccttccggtaggcgcacacatt
gctgttgaggaaggcgaaaaagttaaggttggtcaggctattgttaaaattccacgttca
gcaggtaaatctggtgatattaccggaggtcttccacgtgttacagagctgtttgaggcc
agaaatccatctaacccatctgtggttgctgagatcgatggtgaagttagctttggtaaa
ataaaacgtggtaaccgagaggttatcgtaaaatctaaagccggacaaaccaagaagtat
cttgtatcgctttcaaaacagatactggtacaggagaacgattatgtacgtgcgggaatt
ccactttctgacggagccattacaccggctgatattctcagtgttcagggacctaccaag
gttcaggaatatattgtgaatgaggtacaggaagtatatcgtatgcagggtgtgaaaatt
aatgataagcactttgaagtaattgttcgccaaatgatgcgtaaagttgtaattgtagat
cctggtgataccaagttccttgaaaaacaagaggttgataagattgcctttatggaggaa
aataactggatctatggtcgcaaagttgttgaggagcccggtgattctgagaatcttaag
atgggtcagatcgttagtttacgtcaactgcgcgaagagaattcaatgcttaagcgtaaa
gatatgaagttggtagaagtacgtgatgcaattcctgcaacatcaagtcaggtgttacag
ggaataactaaagctgcacttcaaaccaaatcatttattagtgctgcctcgttccaggag
actaccaaagtattaaatgaagccgcaattagagccaaagaggatgcccttgaaggactt
aaagagaatgttattgtgggtcataagataccagctggaacaggacaacggaagtttgac
gatcttttagttggttcaaaagatgagttcgataaactcctagaatcgaagaaagaggct
caaaagtcttaa
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