Salinivirga cyanobacteriivorans: L21SP5_01644
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Entry
L21SP5_01644 CDS
T04172
Symbol
deaD
Name
(GenBank) Cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
blq
Salinivirga cyanobacteriivorans
Pathway
blq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
blq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L21SP5_01644 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
blq03019
]
L21SP5_01644 (deaD)
03009 Ribosome biogenesis [BR:
blq03009
]
L21SP5_01644 (deaD)
Enzymes [BR:
blq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
L21SP5_01644 (deaD)
Messenger RNA biogenesis [BR:
blq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L21SP5_01644 (deaD)
Ribosome biogenesis [BR:
blq03009
]
Prokaryotic type
rRNA helicases
L21SP5_01644 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
SNF2-rel_dom
Helicase_C_2
Motif
Other DBs
NCBI-ProteinID:
ALO15287
UniProt:
A0A0S2HYY8
LinkDB
All DBs
Position
complement(1965079..1966770)
Genome browser
AA seq
563 aa
AA seq
DB search
MIQTFAESGLQVDILDAIQELGFEQPTPIQAQTIPFLLNSRQDFIGLAQTGTGKTAAFGL
PALHLTDVEDKQTQTLILCPTRELCLQITSDLSKYSKRMRGLNVVPVYGGASIETQIKAL
KKGAQIVVGTPGRSLDLIKRKKLKPHNINRLVLDEADEMLSMGFKEDLDAILENTPEEKQ
TLLFSATLSKEIARITKKYMNNPEQVSVNPRNTAAENVSHIYYMVQAKDRYQVLKRLADV
NPDIYGIVFCRTRQETKDIAKKLMEDGYNADALHGDLSQAQRDEVMHRFRNRQLQILVAT
DVAARGIDVNDLTHVVNYNLPDDTDAYVHRSGRTGRAGKKGLSIAIVHSREGRRIREVEK
VAGVKFTKGTVPGGKEIVTKQLYAFIDKVTQTNVDEKQIQPFMEAIYEKLEPMSREDLIK
HFVSAEFNRFLDYYKDSRDINVSESNRKQEKNGPKARKTRTGGGKIKFSRLYINLGTKHK
LNPTRLIGLINETLRSRDAEIGKIEILKNFSFFEIEDNLTNKLVDGLIGKKFDGHPILVE
LSEAKKAGGRNKGNRRPRTKKRR
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgattcaaactttcgccgaatccggattgcaggtagatatactggacgcaattcaggaa
ttgggtttcgagcaacccacgcctatacaggcacaaacaatacccttccttttaaactca
agacaagattttataggccttgcccaaacaggaacaggtaaaacagccgcttttggttta
ccggcattacatttaaccgatgtcgaagataagcaaacccaaacacttatattatgtcct
acgcgcgaactttgtttgcaaattacaagtgatttgagcaagtactcgaagcgtatgcgt
ggcctcaatgtagtgccggtatatggaggagccagtattgaaacacagataaaggcgcta
aaaaaaggtgcgcagattgttgtagggacaccgggccgttcattagatttaataaaacgc
aaaaaacttaaacctcacaatattaataggttggtgctggatgaagccgatgagatgctt
tccatgggatttaaagaagaccttgatgctattcttgaaaatacaccagaagagaagcaa
acattactcttttcagctacgctttcaaaagaaatagcccgcattaccaaaaaatacatg
aataatcctgagcaggtttcagtgaatccaagaaatactgccgctgagaatgtttctcat
atttattacatggtacaggcaaaagaccgttaccaggttttaaagcgccttgcagacgta
aaccctgatatttatggaattgttttttgccgaacccgtcaggaaacaaaagatatcgca
aaaaagttgatggaagacggctataatgccgatgctttgcatggcgacttgtcgcaggcc
cagcgcgatgaggttatgcatcgttttagaaatcgacagctacaaattctcgtggctacc
gatgttgctgcgcgcggtattgatgtaaatgaccttacacacgttgttaattataacctg
cccgacgatacagatgcttatgtgcacagaagtggtcgcactgggcgtgcaggtaaaaaa
gggctttcaattgccattgtgcattcccgtgaaggtcgcagaattcgcgaagtggaaaag
gttgccggggttaagtttaccaaaggtacggtaccgggcggtaaggaaattgtaacgaag
cagctttatgctttcatagataaggttacccaaacaaatgttgatgaaaaacaaattcag
ccatttatggaggccatttatgaaaaattagaacccatgagtcgtgaggacctgatcaaa
cattttgtctctgcagagttcaatcgttttttagattattataaagattccagagatatc
aatgtttcagaatcaaatagaaaacaagaaaaaaatggaccgaaagccaggaaaacccgc
acaggagggggtaaaattaagttctccaggctttatattaatcttgggaccaaacataaa
ttgaatcctacaaggcttattgggttaattaatgaaaccttgcgatcgagagatgcagaa
ataggtaagattgaaatattgaagaatttctcattctttgaaatagaagataacctgacc
aataagttggtcgatggtcttataggtaaaaagtttgatggacatcctatacttgtagag
ctgtcggaggcgaagaaagcaggtgggcggaacaagggtaataggcgccccagaacaaag
aaaaggagataa
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