Salinivirga cyanobacteriivorans: L21SP5_03856
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Entry
L21SP5_03856 CDS
T04172
Symbol
rnjA
Name
(GenBank) Ribonuclease J 1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
blq
Salinivirga cyanobacteriivorans
Pathway
blq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
blq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L21SP5_03856 (rnjA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
blq03019
]
L21SP5_03856 (rnjA)
Messenger RNA biogenesis [BR:
blq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
L21SP5_03856 (rnjA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B
Lactamase_B_3
OKR_DC_1_N
Motif
Other DBs
NCBI-ProteinID:
ALO17449
UniProt:
A0A0S2I4Q8
LinkDB
All DBs
Position
complement(4697665..4698927)
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AA seq
420 aa
AA seq
DB search
MNLIIHRGSSEIGGTCIELQTASTRILVNFGTPLVNKQGGSFHFDQHKHHSVDRLIRDGI
LPDIKSAYDSNTQIGGLLISHPHADHFGLMQYLSPQIPIWLGKATHEILKINNIFLPQNN
VISHPKYFNKNEPFQIGDFTITPYWNDHSAFDAYSFLIEAEGKRIFYTGDFRAHGRKQKA
FYWLLHNAPKNVDYLMMEGTTIGRNPSQLKTEEDIENELVDTFKNSTGINYIYTSSQNID
RLVSIYKACLQTHKTFVVDIYTAQILNTLSKYAGLPSPAKGFTNIKVFYAHRTTTRLFDS
GKEQVAYQFTKYKITREEIHANPDQFVMVVRPSMEPEIRKLDLSNGNFIYSLWEGYKAQS
STKAFVHRFKSKGFSIHNIHTSGHADVATLKKLVDAINPKAIIPVHTFHKDWSCYICPDI
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgaacctaatcatccaccgcggctcatccgaaattggcggtacctgcatcgaactacaa
actgcaagcacacgcattctcgtcaattttggaacgccactggttaataagcaaggtggt
agttttcattttgatcagcacaagcatcattcagttgatagacttattagggacggaata
cttcctgatatcaaaagtgcatacgattcgaacactcaaattggtggattgctgatttcg
catccacatgccgatcattttggactcatgcaatatttatcgccccagattccgatatgg
ctgggtaaagcaacacatgaaatattgaaaatcaacaatatatttttacctcaaaacaac
gtaattagtcacccaaagtattttaataaaaacgaaccgttccagattggagattttacc
attacgccatactggaacgatcattcagcatttgatgcatattcttttttaattgaggcc
gaaggcaaacgtattttttacaccggcgattttcgtgcgcacggcagaaaacaaaaagct
ttttattggttactgcacaatgcccctaaaaatgtcgattacctgatgatggaaggaacc
accattggcagaaatccatcacaattaaaaaccgaagaagatattgaaaatgaactggtt
gatacatttaaaaattcgacaggaattaactatatctatacatcaagtcaaaatatagat
cggctggtttccatttacaaagcttgtttgcaaacgcataaaacttttgttgttgatatt
tacacagcacagattctcaacacattatcaaagtatgcaggcctcccctcacctgccaaa
ggttttacgaacataaaagttttttacgcacatagaaccacaacgcgattgtttgattca
ggaaaagaacaagtagcatatcagttcacaaaatataaaattacccgggaagaaattcac
gccaaccctgatcagttcgtaatggtggtgcgaccttctatggagcccgaaattagaaaa
cttgatctatcaaatggaaatttcatctattcactgtgggaaggatacaaagctcaatct
tcaaccaaagcatttgttcatcggtttaaatcgaagggtttttcaattcacaacattcac
accagtggccatgctgatgtggctacattaaaaaaattggtcgatgccattaaccccaaa
gctattattccggttcatacatttcataaagattggagttgctacatttgcccggacata
tag
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