Bifidobacterium animalis subsp. lactis Bi-07: W91_0588
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Entry
W91_0588 CDS
T02080
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bls
Bifidobacterium animalis subsp. lactis Bi-07
Pathway
bls03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bls00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
W91_0588
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bls03019
]
W91_0588
03400 DNA repair and recombination proteins [BR:
bls03400
]
W91_0588
Enzymes [BR:
bls01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
W91_0588
Messenger RNA biogenesis [BR:
bls03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
W91_0588
DNA repair and recombination proteins [BR:
bls03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
W91_0588
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
HRDC
RQC
Helicase_C
RecQ_Zn_bind
ResIII
Helicase_Sgs1
DUF3106
AbiEi_3
Motif
Other DBs
NCBI-ProteinID:
AFJ17886
LinkDB
All DBs
Position
complement(669435..671393)
Genome browser
AA seq
652 aa
AA seq
DB search
MTNEREENSALATLRKYFGYESFRPGQAELINAILEGRDVLGVMPTGSGKSVCYQIPSLL
LHGITIVISPLISLMRDQVDGANEIGIPAAFINTTQTPDEQQQVFDAANAGKVKLLYVAP
ERLETARFRAFATHADIALFAVDEAHCVSQWGQDFRSSYLAIGEFIDSLPDRPTVAAFTA
TATERVRRDIVNLLGLRNPLVMVTGFDRTNLYFDMLKLNTREKANWIAHYVAEHADESGI
VYCATRKETEALAQTLNIMVPQLRKAQGSQMEDGPIAAAYHGGMPANVRERAQRDFVTDT
VPLVVATNAFGMGIDKSNVRYVIHHNMPESIEAYYQEAGRAGRDGEPSRCTLLWNESDIV
TRRRLLDMADRNERLTPEEQEVVRRSKRQLLDAMIGYCRTTDCLHDYMTRYFGESNGTER
SADGHCIGGCVNCESTFETVDVSAVARAISMCVHDLGQHYGMGKVVQVLRGSKAQDLANR
GLDAAPTYGRLSEVNEAKIRDVLNQMVADGFLVVSEGRLPLVQFGPRAAETVAPTFRYEI
KKSERKSKSRSSGGDAKSTKLSAGERAAAGLGANTGVDAELFEHLRALRMQIAREIGKPP
YIVFSDRALRDMAERHPHTSKEFLEVNGVGANKLERYGKRFMEVIRIFDNAS
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgacgaacgagcgtgaagagaactccgcactcgccacattgcgcaagtacttcggctat
gagagcttccgccccggccaggcggagctcatcaacgccattctcgaaggacgcgacgtg
ctcggcgtgatgcccacgggctccggcaaatcggtctgctaccagattccctcgctgctg
ctgcatggcatcaccattgtgatctccccgctgatctcgctgatgcgcgaccaggtggac
ggtgcgaacgagatcggcataccggccgcattcatcaacaccacgcagacccctgacgag
caacagcaggtgttcgacgccgccaatgccggtaaggtgaagctgctgtacgtcgctcca
gagcggttggagacggctcggttccgcgcattcgccacacatgccgatatcgcgctgttc
gccgtcgacgaggcgcattgcgtgtcgcagtggggtcaggatttccgctcgtcgtacctg
gcgatcggcgagttcatcgactcgctgccagaccgccccacggtggccgcgttcacggcg
acggcgaccgaacgcgtgcgccgggacatcgtcaatctgctgggattgcgcaacccgctc
gtcatggtgacgggattcgatagaacgaatctgtatttcgacatgctcaagctcaacacg
cgcgaaaaggcgaactggatagcgcactacgtggccgagcatgccgacgaatccggcatt
gtgtattgcgcgacccgcaaggagacggaggcgctcgcgcagacactcaacatcatggtg
ccgcagttacgcaaggcacagggctcccagatggaagacggacccatcgccgcggcatac
cacggcggcatgccggcgaatgttcgcgagcgcgcgcaacgtgatttcgtcaccgacacg
gtgccgctcgtcgttgcgacgaacgcgttcggcatgggcatcgacaaatcgaacgttcgc
tatgtgatccaccacaacatgcccgagagcatagaggcgtactaccaggaggccgggcgc
gcggggcgcgacggcgaaccgagccgatgcacgttgctgtggaacgagtcggacattgtg
acacggcgtcgcctgctcgacatggcggatcgcaacgagcggctcacccccgaggagcag
gaggtggtgcggcgctcgaaacggcaactgctcgatgccatgatcggctactgcagaacc
acggactgcctgcacgactacatgacacggtatttcggggaatcgaacggaaccgaacgc
tcggcggacggccattgcataggcggatgcgtcaactgcgaaagcaccttcgaaacggtg
gacgtctccgcagtcgcacgcgcgatcagcatgtgcgtgcacgatctgggccagcactac
ggcatgggcaaggtcgtgcaggtgctgcgcggctccaaagcgcaggatctcgccaatcgc
ggattggatgcggcgcccacgtacggccgcctgagcgaagtgaacgaagccaagattcgc
gacgtgctcaaccagatggtggccgacggcttcctcgtagtgagtgaagggcggctgcca
ctcgtgcagttcggcccccgagccgccgaaacagtggcacccacgttccgatacgagatc
aagaaatcggagcgcaagtcgaagtcacgaagcagcggcggagacgcgaagtccacgaaa
ctgagcgccggcgaacgtgccgccgcaggattgggcgccaacaccggcgtggacgcggaa
ctgttcgagcacttgcgtgccctgcgcatgcagatcgcacgcgagataggcaaaccgccc
tacattgttttctcggatcgcgcactgcgcgacatggccgaacggcacccacacacgtcg
aaggagttcctcgaggtcaacggcgtgggcgccaacaagctcgaacgctacggcaaacgg
ttcatggaggtcattcgaatcttcgacaatgcctcgtga
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