Bifidobacterium animalis subsp. lactis Bi-07: W91_1380
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Entry
W91_1380 CDS
T02080
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bls
Bifidobacterium animalis subsp. lactis Bi-07
Pathway
bls03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bls00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
W91_1380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bls03021
]
W91_1380
03400 DNA repair and recombination proteins [BR:
bls03400
]
W91_1380
Enzymes [BR:
bls01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
W91_1380
Transcription machinery [BR:
bls03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
W91_1380
DNA repair and recombination proteins [BR:
bls03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
W91_1380
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
DUF5887
Motif
Other DBs
NCBI-ProteinID:
AFJ18651
LinkDB
All DBs
Position
complement(1572844..1576404)
Genome browser
AA seq
1186 aa
AA seq
DB search
MSQTTTNTTSVTARADQHDIDLHKASDRVNFGSIKEPIDVPYLLGVQTDSFDWLVGNERW
KKRVEEDEANGTNTVPHVSGLDEVFHEISPIENFAQTMSLTFSDPYFEEPRHTVQECKEK
DYTYSAPLYVNAEFENGETGEIKSQTVFMGDFPLQTPHGTFIIGGTERVIVSQLVRSPGV
YFDRQPDRTSDKEIFGAKIIPSRGAWLEFEIDKRDFLGVRVDRKRKQSAIVFLMAIGMTR
SEIRDAFKDYPLVLDALEKETIDSEDAALVDLYRKIRPADAATPEAGRTLLDSFYFNTKR
YDLARVGRYKINRKLGLEKDYNDRSLSREDIIATIKYLVTLHAGDATFPGKRDGEDVELR
VDVDDIDHFGNRRIRQVGELIQNQLRTGLSRMERVVRERMTTQDAEAITPQSLINIRPVN
ATIKEFFGTSQLSQFMDQNNPLAGVTNKRRLSALGPGGLSRDRASMEVRDVHPSHFGRMC
PIESPEGPNIGLIGSLATFGRINPFGFIETPYRKVENGHVTDEVVYMTADREVEHVIAQA
NQKLDENGNFVEKEALVRDAAGEAEDVPVEMVDYMDVSPRQMVSVGASLIPFLEHDEGHR
ALMGTNMQRQAVPLIKSERPLVGTGAEWRAAVDSGDVILAEKPGVVIYVSADIIRVMNDD
GTTSSYKLAKFQRSNQTTCYNQVPLIHDGERVEKGTVLADGPATEKGEMALGKNLLVAFM
PWNGYNYEDAVIISQRLVQDDTLSSIHIEEYEIDARETKLGAEEITRDLPNVGEDAVANL
DERGIIRIGAEVEAGDILVGKVTPKGETELTPEERLLRAIFGEKSREVRDTSLRVPHGET
GTVIAVKEITREDAEEDGDELPNGVNQMIRVYIAQHRKITQGDKLSGRHGNKGVISRILP
EEDMPFLADGTPVDIMLNPLGVPSRMNLGQVLELHLGWVAHAGWDISLDPDMEAEWKKMV
PKGAEKGEPGTPVATPVFDGVRQDVLKGLLSTTLTDRDGNKLVGDNGKATLFDGRTGEPY
PKPISVGYMYMLKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAY
GAAYTLHEMMTTKSDDVDGRVRVYGAIVKGDNLPPAGIPESFKVLLKEMQSLSLNVEVLN
AEGVAIDMKDEDDDPVSSSNDLGFNIGARPDAAAKADQVADEPEYR
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
ttgtcacagactacgacgaataccacctccgtcaccgcacgcgcagatcagcatgacatc
gatctgcacaaggcttcggaccgtgtgaatttcggctccatcaaagaacccatcgacgtg
ccgtacctcctcggcgtgcagaccgacagcttcgactggctcgtcggcaacgagcgctgg
aagaagcgcgtggaggaagacgaggcgaacggcaccaacaccgtgccgcacgtctccgga
ctcgatgaggtgttccacgagatctccccgatcgagaacttcgcacagaccatgagcctg
acgttctccgacccatacttcgaggaaccgcgccacaccgtgcaggaatgcaaggagaag
gactacacctactccgcgccgctgtacgtgaacgccgagttcgagaacggcgagaccggc
gagatcaagtcccagaccgtgttcatgggtgacttcccgctgcagaccccgcacggcacg
ttcatcatcggcggcaccgagcgagtgatcgtctcccagctcgtgcgttccccgggcgtc
tacttcgaccgtcagccggaccgcacctccgacaaggagatcttcggcgccaagatcatt
ccgagccgtggcgcatggctcgagttcgagatcgacaagcgcgacttcctcggagtgcgc
gtggaccgcaagcgcaagcagtcggccatcgtcttcctcatggcgatcggcatgacccgc
agcgagatccgcgacgcgttcaaggattacccgctcgtgctcgatgccctcgagaaggag
accatcgactctgaggacgccgccctcgtggacctgtaccgcaagattcgtccggccgat
gccgcgacgccggaagccggccgcacactgctcgactccttctacttcaacacgaagcgc
tacgatctggcccgcgtcggccgctacaagatcaaccgcaagctcggtctggagaaggat
tacaacgaccgcagcctgagccgcgaagacatcatcgccacgatcaagtacctcgtgacg
ctgcatgccggcgacgccaccttcccgggcaagcgtgacggcgaggacgtcgagctgcgc
gtggatgtcgacgacatcgaccacttcggcaaccgccgcatccgccaggtgggcgagctg
atccagaaccagctgcgcaccggtctgagccgcatggagcgcgtggtgcgcgaacgcatg
accacgcaggacgccgaggccatcacgccgcagtcactcatcaacattcgtccggtgaat
gcgacgatcaaggagttcttcggaacgtcccagctctcgcagttcatggatcagaacaac
ccgttggcgggcgtcacgaacaagcgccgtctctccgcgctgggccccggcggcctgtcg
cgcgaccgcgcctccatggaggtgcgagacgtgcacccgtcgcacttcggccgcatgtgc
ccgatcgagtcccctgaaggcccgaacatcggcctcatcggctcgctggcgaccttcggc
cgcatcaaccccttcggcttcatcgagaccccgtaccgcaaggtcgagaacggccatgtg
accgacgaggtcgtctacatgaccgctgaccgcgaggtcgagcacgtgatcgcccaggcc
aaccagaagctcgacgagaacggcaacttcgtcgagaaggaagccttggtgcgtgacgcc
gccggcgaggcggaggacgttccggtcgagatggtcgattacatggacgtctccccgcgc
cagatggtgtcggtcggcgcatcgctgattccgttcctcgagcacgatgaaggccaccga
gcgctcatgggtacgaacatgcagcgtcaggccgtcccgctcatcaagtccgagcgcccg
ctcgtgggcaccggcgccgaatggcgtgccgccgtcgattccggcgacgtcattctggcc
gagaagccgggcgtggtcatttacgtctccgccgacatcattcgtgtgatgaacgacgat
ggcacgacctcgagctacaagctggccaagttccagcgctccaaccagaccacctgctat
aaccaggtgccgctcatccacgacggcgaacgcgtggagaagggcaccgtgctggccgat
ggcccggccaccgagaagggcgagatggcgcttggcaagaacctgctggtcgccttcatg
ccttggaacggttacaactacgaggatgccgtgatcatctcgcagcgtctggtacaggac
gacacgctctcctcgatccacatcgaggagtacgagatcgacgcccgtgagaccaagctg
ggcgccgaggagatcacgcgcgacctgccgaacgtgggcgaggacgccgtggccaacctc
gacgagcgtggcatcattcgcattggtgcagaggtcgaggccggcgacatcctcgtgggc
aaggtcaccccgaagggcgagaccgagctcacgcctgaggagcgtctgcttcgcgccatc
ttcggcgagaagagccgcgaggtgcgcgacacctcgctgcgcgtgccccacggcgagacc
ggcaccgtgattgccgtcaaggagatcacgcgcgaggatgccgaggaggacggcgacgag
ctgccgaacggcgtgaaccagatgatccgcgtctacatcgcgcagcaccgcaagatcacc
cagggcgacaagctctcgggccgtcacggcaacaagggcgtcatctcccgcattctgccg
gaagaggacatgccgttcctggcggacggcaccccggttgacatcatgctcaacccgctc
ggcgtgccttcgcgaatgaacctcggccaggtgctcgaactgcacttggggtgggtcgcc
catgccggctgggacatctccctcgatccggatatggaagccgaatggaagaagatggtg
ccgaagggcgccgagaagggcgagccgggcaccccggtggcaaccccggtgttcgacggc
gtgcgtcaggacgtgctcaagggcctgctttccacgacgctgaccgaccgcgacggcaac
aagctcgtcggcgacaacggcaaggcgacgctgttcgacggccgtaccggcgaaccgtat
ccgaagccgatctccgtgggctacatgtacatgctgaagctccaccatctggtcgacgac
aagatccacgcgcgttccaccggcccgtactcgatgattacgcagcagccgttgggcggc
aaggcccagttcggcggccagcgcttcggcgagatggaggtgtgggccctcgaggcctac
ggtgccgcctatacgctgcacgagatgatgaccacgaagtccgatgacgtcgatggccgt
gtgcgtgtgtacggtgcgatcgtgaagggcgacaacctgccgcctgcaggcatccccgag
tcgttcaaggtgctgctcaaggaaatgcagtcgctgtccctcaacgtcgaagtgctcaac
gccgaaggcgtggccatcgacatgaaggacgaggacgacgatcctgtttcctcctccaac
gatctcggcttcaacatcggcgcccgcccggacgccgccgcgaaggccgaccaggtcgct
gacgaaccggaataccgctga
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