Bradyrhizobium lupini: AB3L03_24940
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Entry
AB3L03_24940 CDS
T11005
Name
(GenBank) DEAD/DEAH box helicase
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
blup Bradyrhizobium lupini
Pathway
blup03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
blup00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AB3L03_24940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
blup03400
]
AB3L03_24940
Enzymes [BR:
blup01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AB3L03_24940
DNA repair and recombination proteins [BR:
blup03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AB3L03_24940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
ResIII
CarD_TRCF_RID
AAA_30
SecA_DEAD
RecG_dom3_C
AAA_25
Cas3-like_C_2
UB2H
AAA_22
MinC_N
Motif
Other DBs
NCBI-ProteinID:
XDI29338
LinkDB
All DBs
Position
5241328..5244444
Genome browser
AA seq
1038 aa
AA seq
DB search
MLALHLLEQWEKSGRDGLVFLCDDESRAERLGGVIHALDPSVDVLVFPRLNTLPFDGLEP
SREIAGRRSSVLRRLAKTKKPVFLVSTAEAIMERLPLPASWSRSSLTLKVGAPYSETELE
TRLEALGYDLDEEAEYPGGVLFHGKTFEVFPAGALAPFRIEHSGDTIRKIVAVDPIEHEV
VYETPELIIDPMSERIALGATRGQRATLPDYCSRARWIADAGVSAHAESWLGTIEDAAGR
RDAEREYLGQADWKQLKKRISVLPRKTAFISTPEFSKLASPRKALRAFVADMQRGGSRLL
FVAAVEDDLRAMERMSGIKAERLADWSEVTKARSREGALLADFDAGFIGAGRKPLVVVTA
SDVLGSRAHHPQPMARAWNPAFDHPDVPEKGAAIVHLQRGLAVLDGLQTLDMGKGSRREM
IRLKFAGDNAVLVPPSDLAVIWPYAGEPGKLTLDKADGSSWWARRTEAEAEIQVAAKALA
KHISQRLRRRAPKLVPPGPAYEKFVARFPYFTTVDQAQAIQDVLDDLAAGHPMDRVICGD
VGFGKTEVALRAAAAVALSGKQVAIAAPTTVLARQHVETFRKRFGPLGIEVGSLSRASSG
PETRETKEGLRRGTLKVVVGTQALAAKDVKFAELGLVIIDEEQHFGAAEKAKLSGLAKGA
HSLWMSATPIPRTLAAGLAGFRDLSVIASPPVHRLPIVTRIAPLSDAAIAAALLRERRRH
GQSFLICPRIQDLEPMLARVQSVAPELRIVCLHGRLPVDEIDDRMMSFVDGEADVLLATN
IVESGLDIPRANTIVVCWPEKFGLAQLHQLRGRVGRGGTRAFAHLLTEATSEQSEKRLAV
LEEFSKPGAGFAISERDLDLRGAGDLFSEQQSGHVQVFGPVLYSHLLKRASERGSDTGAD
LWVPDLNMPLADMLPEGYVQSEAVRLEIYGRAARCRSDDDLEDLEEEISRRFGRLPPEAR
DFFASARLRIDCKRRGIVRLDVGPEAVAATFLPGRLRKSRAKSQTGALQRDGDRVVHAGR
RDQDPFSRVEEFLDLLDG
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atgctggcgctgcatctgctcgagcagtgggagaagtccggccgcgacggcctcgtcttc
ctctgcgacgacgagagtagggcggagcggctgggcggcgtgatccacgccctcgatccc
tcggtcgacgtgctggtgtttccgcgcctgaacacgctgcccttcgacggcctcgagccc
tcccgcgagatcgcgggccggcgcagctcggtgctgcggcgtctcgccaagacaaagaag
cccgtcttcctggtgtccaccgcggaagccatcatggaacggctgccgctgccggcgagc
tggtcgcggtcgagcctcacgctgaaggtgggcgcgccctattccgagaccgagctggag
acgcggctggaagctctcggctacgatctcgacgaagaggcggagtatccgggcggtgtc
ctgttccatggcaagacgttcgaagtgtttcccgccggcgcactcgctcccttccggatc
gagcattccggcgacacgatccgcaagatcgtcgcggttgatcctatcgagcacgaggtc
gtctacgagaccccggaattgatcatagatcccatgtccgagcggatcgctctgggagct
acgcgcggacagcgggcgacactgcctgattattgcagccgcgcgcgatggatcgcggat
gccggggtatcggctcacgccgagagctggctgggcacgatcgaggacgctgccggccgc
agggatgcggaacgcgaatatctggggcaggcggactggaagcagctgaagaagcgcatc
agcgtgctgccgcgcaagacggccttcatctcgacgccggagttctcgaagctggcctcg
cctcgcaaggcgcttcgcgccttcgtcgccgacatgcagcgcggcggatcgcggctgctg
ttcgtcgcggccgtcgaggacgaccttcgcgcgatggagcgcatgagcggcatcaaggcg
gagcgcctggccgattggagcgaggtgacgaaggcacggagccgcgaaggcgcgctgctg
gccgatttcgacgcggggttcattggcgccggccgcaagccgctcgtcgtcgtgaccgcg
tccgacgtgctcggcagccgagcccatcatccgcagccgatggcgcgcgcctggaatccg
gctttcgatcatcccgacgtgccggaaaagggcgccgctatcgtccatctgcaacgcggg
ctcgccgtgctcgatggcttgcagaccctggatatgggcaagggatcgcgacgcgagatg
atcaggctcaaattcgcgggcgacaatgccgtgctcgtaccgccctccgatcttgccgtg
atctggccttatgccggcgagcccggcaagctgacgctggacaaggcggacggtagcagc
tggtgggcgcggcgcaccgaggcggaagcggaaatccaggtcgccgccaaggcgctcgcc
aaacacatcagccagcgcctccgccgtcgtgcaccgaaactggtgccgccggggccagct
tacgaaaaattcgtcgcgcggttcccctatttcacgacagtggaccaggcccaggcgatt
caagacgtcctcgacgatcttgcggcgggccatcccatggacagggtgatctgcggtgac
gtcggcttcggcaagaccgaggtcgcgctgcgggcggcggccgcagtggcgctgtccggc
aagcaggtggcgatcgcggcgccgacgaccgtgctggcgcggcagcatgtcgaaaccttc
cgcaagcgattcggccctctcggcatcgaggtgggaagcctgtcgcgggccagttcaggc
ccggagacgcgagagaccaaggaggggctgcggcgcggcacgctgaaagtcgtggtcggc
acgcaggcgcttgcggcaaaggacgtgaagttcgccgaactcggcctcgtcatcatcgac
gaagagcagcatttcggggcggccgagaaggcgaagctttcaggcctcgccaagggggcc
cattcgctgtggatgagcgccacgccgatcccgcgcacgctcgcggcgggtcttgccggc
ttcagggacctcagcgtgatcgcctcgccgccggttcatcgccttcccatcgtgaccagg
atcgcgccgctgtccgatgctgccattgccgcagcgctgctccgtgagcgcaggcggcac
ggtcagagcttcctgatctgcccacgcatccaggatctggagccgatgctggcgcgggtg
caatcggtggcgccggagctgcgcatcgtctgtcttcacggcagactgcccgtggacgag
atcgacgatcgcatgatgagtttcgtcgatggcgaggcggatgtgctgctggcgaccaat
atcgtggaaagcggtctcgatattccgcgcgcgaacaccatcgtggtgtgctggcccgaa
aagttcgggcttgcgcagctgcatcagctcaggggacgggtgggacgcggcggcacgcgc
gcttttgctcatctgctgacggaagcgacctcggagcagtccgagaagcgcctggcggta
ctggaggagttcagcaagcccggggccggctttgcgatcagcgagcgcgacctcgacctc
aggggcgccggcgatctgttctcggaacagcagtccgggcatgtccaggtgttcggaccg
gtgctctacagtcatctgctgaagcgcgcgtccgagcgaggcagcgataccggggccgat
ctgtgggtgcccgatctcaatatgccgctcgccgacatgctgcctgaaggctacgtgcaa
tccgaggcggtccggctcgagatctatgggcgcgctgccaggtgccggagcgacgacgat
ctggaagatctggaagaggagatctcgcgtcgtttcggcaggctgccgccggaggcccgc
gacttcttcgcctccgccaggctgcggatcgattgcaagcggcgcggtatcgtcaggctc
gatgtcgggcccgaggccgtcgccgcgacgttcctgccggggcgactacggaaatcgagg
gcgaagtcgcagacgggagcgctgcagcgcgacggcgaccgcgttgttcacgccggccgc
cgcgaccaggatccgttcagccgggtcgaggagtttctcgacctgctggacggctag
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