Bradyrhizobium lupini: AB3L03_25380
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Entry
AB3L03_25380 CDS
T11005
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
blup Bradyrhizobium lupini
Pathway
blup03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
blup00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AB3L03_25380 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
blup03400
]
AB3L03_25380 (ligD)
Enzymes [BR:
blup01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AB3L03_25380 (ligD)
DNA repair and recombination proteins [BR:
blup03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AB3L03_25380 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
DUF4232
Motif
Other DBs
NCBI-ProteinID:
XDI29410
LinkDB
All DBs
Position
5333846..5336533
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AA seq
895 aa
AA seq
DB search
MLQKLSKYRQKRDFEKTPEPSGKTAVAPSKQRRFVIQKHDASRLHYDLRLEFDGVFKSWA
VTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPEGQYGGGTVMLWDRGTWESDDPERGFK
KGDLKFTLHGEKLHGSWVLVRMRNDRTGGKRTNWLLIKHRDEYVREGADNDILEEDKSVA
SGRAMDQIAEGKGRAPKPFMLAKGTKAKADAVWQSNRADEAKERTVKPAPRAALKTGKTV
KKKATTATTANKAAEMPDFVAPQLCTSVERPPGGDGWCHEIKFDGYRVQLRVEGGKATLK
TRKGLDWTEKFATIAKEAGALPDMMVDGEIVALDHNGAPNFSSLQAALSDGKTEELIFFA
FDLLFAEGLDYRRLPLGERKARLKELLEARKRKSSQIRYVEHFESGGDAVLQSACKLELE
GVVSKKLDAPYRSGRTESWTKAKCRAGHEVVIGGYKTTNGKFRSLMAGVHRGDHLAFVGM
VGTGFGADKVKRIMPSLKAMEAKQSPFGGKNAPKKTREVHWLKPELVAEIEFAGFTADGN
IRQAAFKGLRQDKPAEEVEAETPVDTELAEPSTKQRAKPRAQAKTGARTAQAGTAEVMGV
VLSKPDKALWPDDGNGDPVTKLDLARYLEAVGEWMIVHLKGRPCSLIRAPDGIKGECFFQ
RHAMQGTSNLLELARVSGDRKPYLQIDRIEGLAAVAQIGGVELHPWNCAPYAYDTPGRLV
FDLDPAPDVVFAEVVEAAKEMRQRLTDIGMESFCKTTGGKGLHVVVPLRHGARDQVSWKE
AKAFAQGVCQWMADDAPERYLLNMSKKLRNGKIFLDYLRNDRMSTAVAPLSPRARDGATV
SMPVTWAQVKSDLDPKRYTVRTVPGLLARSKAWDGYDDAAASIKAAIKKLAGKTK
NT seq
2688 nt
NT seq
+upstream
nt +downstream
nt
gtgctgcaaaagctctccaagtatcgacagaaacgtgatttcgagaagacgcccgagcca
tcgggcaagaccgcggtggcgccgtcgaagcagcgccgcttcgtgattcagaagcatgac
gcttcgcggctgcactacgatctgcggctcgagttcgatggcgtcttcaagtcctgggcg
gtgacaaaagggccctcgctcgatccgcacgacaagcggctggccgtcgaggtcgaggac
catccgctcgactatggcgacttcgaaggcacgattccggaaggccagtacggcggcggc
acggtcatgctgtgggatcgcggcacctgggaatccgatgatcccgaacgcggtttcaag
aagggcgatctgaagttcacgctgcacggcgagaagctgcacggcagctgggtcctggtg
cgcatgcgcaacgaccgcaccggcggcaaacggaccaattggctcctgatcaagcatcgc
gacgaatatgttcgcgagggcgcagacaacgacattctcgaggaggacaaatcggtcgcc
tccggccgcgcgatggatcagatcgccgaaggcaagggccgtgcgccaaaaccgttcatg
ctggcgaagggcaccaaggccaaggccgacgcggtctggcagtccaaccgggcggacgag
gcgaaagagcgcacggtcaagccggcgccccgcgcggcgttgaaaaccggcaaaacggtc
aagaagaaagcgacgaccgcgacgaccgcgaacaaggcggcggagatgccggatttcgtg
gcgccgcagctctgtacgtcggtcgagcgcccgccgggcggcgacggctggtgccacgag
atcaagttcgacggctaccgcgtgcagctgcgggtcgagggcggcaaggcgacattgaag
acgcgcaaaggcctcgactggaccgaaaaattcgcaactatcgcgaaggaggcgggcgcg
ctgccggatatgatggtcgacggcgagatcgtcgcgctcgaccacaatggagcacccaat
ttttcgtcgctccaggccgcgctgtcggacggcaagaccgaggagctcatcttctttgcg
ttcgacctgctgtttgcggaaggcctcgattatcgccggctgccgctcggcgagcgcaag
gcgcggttgaaggagctgctggaagcgcgtaagcgcaaatcgagccagattcgctatgtc
gagcatttcgaaagcggcggcgacgccgtgctgcaatccgcctgcaagctcgagctcgag
ggcgtggtgtcgaagaagctggacgcgccctatcgttcggggcggacagaaagctggacc
aaagcaaaatgccgcgccggccatgaggtcgtgatcggcggttacaagaccaccaatggc
aaattccgttcgctgatggccggcgtgcaccgcggtgatcatctcgccttcgtcggcatg
gtcggcaccggcttcggcgcggacaaggtcaagcgcatcatgccgtccttgaaggctatg
gaggcgaagcaaagccccttcggcggcaagaacgcaccgaaaaagacgcgcgaggtgcac
tggctgaagccggagctcgtggcggagatcgagttcgccggcttcactgccgacggcaat
atccgccaggccgccttcaagggtctgcggcaggacaagccggcggaggaggtcgaggcc
gagacaccggtcgataccgagcttgccgagccctcgacgaagcagcgcgcgaagccgcgc
gcgcaagcgaagaccggtgcacgaacagcgcaagccggcactgccgaagtgatgggtgtc
gtgctctcgaagccggacaaggcgctgtggccggacgacggcaatggcgatcccgttacc
aagctggatctcgcgcgctacctcgaagccgtcggcgaatggatgatcgtgcatctcaag
ggccggccgtgctcgctgatccgcgcccctgacggcatcaagggcgaatgcttcttccag
cgccacgccatgcagggcacctcgaaccttctggagctcgcgcgggtctccggcgaccgc
aagccctatttgcagatcgaccgcatcgaagggctcgcggccgtggcgcagatcggcggc
gtcgagctgcatccctggaattgcgcgccctacgcctacgataccccgggccggctggtg
ttcgatctcgatcccgcgcccgacgtcgtcttcgccgaggtcgttgaggccgccaaggag
atgcggcagcggctgaccgacatcggcatggaaagcttctgcaagaccaccggcggcaaa
ggtctgcatgtcgtggtcccgctgcgtcacggcgcgcgcgaccaggtgagctggaaggag
gccaaggccttcgcgcaaggcgtctgccagtggatggcggacgacgctcccgagcgctat
ctgctcaacatgtcgaagaagctgcgcaacggaaagatcttcctagactatctgcgcaac
gatcggatgtcgacggcggtggcgccgctgtcgccgcgtgcgcgagatggtgcgactgtg
tcgatgccggtcacgtgggcgcaggtgaagagcgacctcgatccgaagcggtacacggtg
cggacggtgcccggcttgctggcgcgatcgaaggcgtgggatggttatgacgatgcagcc
gcgtcgatcaaggcggcgatcaagaagctcgccgggaaaacgaagtag
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