Bifidobacterium animalis subsp. lactis B420: W7Y_0021
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Entry
W7Y_0021 CDS
T02079
Name
(GenBank) Excinuclease ABC subunit A of unknown function
KO
K03701
excinuclease ABC subunit A
Organism
blw
Bifidobacterium animalis subsp. lactis B420
Pathway
blw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
blw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
W7Y_0021
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
blw03400
]
W7Y_0021
DNA repair and recombination proteins [BR:
blw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
W7Y_0021
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
W7Y_0021
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_DNA-bind
AAA_21
nSTAND1
DnaJ_CXXCXGXG
AAA_29
AAA_16
Anti-TRAP
AAA_25
ATPase
RsgA_GTPase
Viral_helicase1
AAA_22
AAA_23
MobB
TMEM106_N
cobW
DUF463
Tll0287-like
RNase_E_G_Thio
DUF4428
Motif
Other DBs
NCBI-ProteinID:
AFJ15780
LinkDB
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Position
23538..26039
Genome browser
AA seq
833 aa
AA seq
DB search
MAQTIDITGARVHNLKRVDVRVPIGKMVAVAGVSGSGKSSLALGVLYAEGSRRYLEGLST
YTRRRISQSGEAKLDAIEHVPPALALHQRPSVPGIRSTFGTMSELLNSLRLMTSRLGNYT
CPNGHMLDPTPNVALERPIICPVCGEEVQALGAEDLAFNSGGACPTCSGTGIVRTVNQAT
LIADPNLTIEQGAVAPWRSLMWSIMVDVCREMGVRTDVPYKDLTAHEKEIVLHGPAEKRH
IIYHSKKENRAGELDFTYFSAERTVLNALDKAKDAKALKRVEPFITEEPCPDCHGTRLNK
RARILPVDGKTLPEQCAMQLDNLAQWVRTVPATMPDDMHEMAQSIVDEFTRTARRLLELG
LGYLTLDRAGSTLSTGERQRIQLARAVRSELTGAMYVLDEPSIGLHPANVDGLLGVMRDL
KAQGNTVVVVDHDTRVLRDTDWIIEMGPGAGSHGGTVIAQGTVSDIEGNPHSLIAPFLAS
ERLQIVRPQTPANKVFDEGALEIKTAPLHTVHALDARVPKHRLTVVTGVSGSGKTTLVLE
SLVPALTAKIAGERLPEHVRALDAPGIDRVTMIDATPIGANVRSTVATYSGVLDDLRRLY
ARTDAAKARGLKAGAFSYNTGSLRCPTCDGTGQITLDVQFLPDVDIDCPDCHGTRYGDVA
GEITWTPKNGHKPVSLPDLLAMTVDEALDIFTGTGQRRLHAELETLHELGIGYLTLGEST
PALSGGEAQRLKLASEMGRAQDGTLFVFDEPTIGLHPLDVRTLIGVFQKLIDHGASVVVI
EHDLDMIANADWIIDMGPGGGENGGEIVATGTPVQIAENPLSVTGRYLKPCVE
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atggcacagaccatcgatatcaccggcgctcgtgtgcataatctcaagcgcgtggatgtg
cgggtgccaattggcaagatggtggcggtggcgggagtctccggttcgggcaaatcatcg
ctcgcgctcggcgtgctttacgcagaaggctcgcgccgctacctggaagggctctccaca
tacacgcgccgccgcatctcgcaaagcggcgaggcgaaactcgacgcgatcgagcatgtg
ccgcccgcgctcgcgttgcatcagcggccgagcgtgccgggtatacgcagcaccttcggc
acgatgagcgagctgctcaacagtctgcggcttatgacctcgcggctcggcaattatacc
tgcccgaacggccatatgctcgacccgacaccgaacgtcgcgctcgaacggccgatcatc
tgcccggtgtgcggggaggaagtgcaggcgctcggtgcggaggacctcgcattcaactcg
ggcggcgcgtgcccgacgtgctcgggaaccggcatcgtgcgcacggtgaaccaggcaacg
ttgattgcggacccgaatctgacgatagaacaaggcgctgtggcgccctggcgttcgctc
atgtggtcaatcatggtcgacgtatgccgcgaaatgggcgtgcgcactgacgtgccgtac
aaggatctgaccgcgcatgagaaggagattgtgctccacggaccggccgagaaacggcat
attatctaccattcgaagaaagagaaccgtgccggcgagctcgacttcacctatttcagc
gccgaacgcaccgtgctcaacgcgctcgacaaagccaaggacgccaaggcgctgaaacgc
gtggaaccgttcatcaccgaggagccatgcccggactgccacggcacgcgactcaacaaa
cgcgcacgcatactgccggtggatggcaagacgttgcccgagcagtgtgcgatgcagctc
gacaatctcgcgcagtgggtgcggaccgtacccgccacgatgccagatgatatgcatgag
atggcgcagtcaatcgtcgacgagttcacgcgcaccgcacggcgtctgctcgaactcgga
ctcggctatctcacgctcgaccgtgcgggctccacgctgtcgaccggcgaacgccagcgc
atccagctcgcgcgagcggtgcgcagtgagctcaccggcgcgatgtacgtgctcgacgag
ccgtcgatcggcttgcatccggcgaatgtggacggtctgctcggcgtgatgcgcgatttg
aaagcgcagggaaacactgtggtcgtcgtcgaccatgacacccgcgtgctgcgcgacacc
gactggatcatcgaaatgggcccgggcgcgggatcacatggcggcactgtgatcgcgcag
ggtacggtgagtgacatcgaaggcaacccgcactcgctcatcgctccgttccttgcgagc
gagcgtttgcagatcgtgcgcccgcaaacgcccgcgaacaaggtattcgacgaaggcgca
ctggaaatcaagaccgcgccgctgcacaccgtgcacgccttggatgcgcgcgtgccaaaa
catcgtctcaccgtggtcaccggcgtctccggttccggcaagaccacgctcgtgctcgaa
agccttgtgcccgcgctcactgcgaagattgccggcgaacgcctgcctgaacatgtgcgc
gcgctcgatgcgccgggaatcgaccgcgtcacgatgatcgacgcgacgccgatcggtgcg
aacgtgcgctccaccgtcgccacctacagcggtgtgctcgacgatttgcggcggctctat
gcgcgcaccgatgcggcgaaggcgcgtggactcaaggcgggcgcgttctcgtacaacacc
ggctcgctgcgctgccctacctgcgatggcaccgggcagatcacactcgacgtgcagttc
ctgcccgacgtggacatcgactgcccggactgccacggcacacgctacggcgatgtcgca
ggcgagatcacctggacgccgaagaacgggcacaagccggtgtcgctgccggatctgctc
gcgatgacggtggacgaggcgctcgacatcttcaccggtaccgggcagcggcgcctgcat
gccgaactcgagacattgcacgagctcggcatcgggtacctgacgttgggcgagagcacg
ccggcgctctcgggcggcgaagcgcagcggctcaaactcgccagcgagatgggccgcgcg
caggatggcacgctgttcgtgttcgacgagccgacgattggcttgcatccgcttgacgtg
cgcacgttgatcggcgtgttccagaagctcatcgaccacggtgcgagcgtggtcgtgatc
gaacacgacctcgacatgattgcgaacgccgactggatcatcgacatgggcccaggcggc
ggcgagaacggcggtgagatcgtcgccaccggtacgcctgtgcagattgctgagaatccg
ctcagcgtgaccggccgctatctcaagccctgcgtggagtga
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