Bifidobacterium longum BXY01: GS08_01360
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Entry
GS08_01360 CDS
T03387
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
blx
Bifidobacterium longum BXY01
Pathway
blx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
blx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GS08_01360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
blx03021
]
GS08_01360
03019 Messenger RNA biogenesis [BR:
blx03019
]
GS08_01360
Transcription machinery [BR:
blx03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
GS08_01360
Messenger RNA biogenesis [BR:
blx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
GS08_01360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
SAP
Spore_III_AA
NACHT
FANC_SAP
Motif
Other DBs
NCBI-ProteinID:
AIF89848
UniProt:
A0A7U4H4F3
LinkDB
All DBs
Position
326441..328510
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AA seq
689 aa
AA seq
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MANSQNLEDMKLPELKELAKQMGLRGTSTMRKPELLATLQAARNGGEPPAGVTVRAPKAA
KTAKVVKAPQSDAAEANTTDNADVATQSPAPAPAATEPQLDLPLPVADDAKKDETEPRRT
RRKAADDAASEPRAARHRRDDDQSDFARRKPRKKADEAGDLLATLDLGDAAPTERRRERH
EDVEVPLIRRVRDDEDEQPRRRRRTAENSEETVRDLDDILATLPTQKHEETSEDGEQNDD
HEFVRRNRRDRSDRNDRDNRNDRNDRRNRRMRGRDRDNADDDRRYDDRDNRSDRNDRDSR
REEPQEDLVPVAGIVDVLDSYAFVRTSGYLPGPNDVYVSMGQVKKYGLRKGDAVHGSIRA
PREGDRRNQRQKFVPLQAIDSINGQSVEEALNRPQFSKLTPLYPQERLKQETAPNKLTGR
IMDIVSPIGKGQRGLIVSPPKAGKTITLQNIANSIAANNPEVHLMVVLVDERPEEVTDME
RTVQGEVISSTFDRPASDHTTVAELAIERAKRLVELGQDVVVLLDSMTRLARAYNIAAPA
SGRILSGGVDAQALYPPKKFFGAARNIENGGSLTIISSALVETGSKMDEVIFEEFKGTGN
MELRLSRELADKRLFPAIDINASGTRREELITNPQELPIIYRLRRLLGGMEPEQAYQTLV
PRLKKTATNRDFLAAIVQQANTGNAVNGN
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaatagccagaatcttgaggatatgaagctgcctgagctcaaagagctcgctaaa
cagatgggcctgcgcggcacgtcgaccatgcgcaagcccgagctgctcgccaccctgcag
gcggcgcgcaatggtggagagccgccggccggtgtgaccgtgcgcgcccccaaggccgcc
aaaaccgccaaggtcgtcaaggctccgcagtccgatgccgctgaggccaataccacagac
aatgctgacgtggccacccagtcgccggctccggctccggccgccacggaaccgcagctc
gatttgccgcttcccgtggccgacgatgccaagaaggacgagaccgaaccgcgacgcacc
cgtcgtaaggccgccgatgatgccgcatccgaaccgcgtgcggcccgccatcgtcgcgat
gacgaccagtccgatttcgctcgccgcaagccgcgcaagaaggccgatgaggccggcgat
ctgctggccacgctcgatttgggagatgcagcgcctaccgagcgtcgccgcgagcgccat
gaggacgtggaagttccgctgattcgccgagtccgtgatgatgaggacgagcagcctcgc
cgccgtcgtcgcactgcggaaaacagcgaagaaaccgtgcgtgacctcgacgatatcctg
gccacgctgcccacgcagaagcacgaggaaacgtccgaagacggcgagcagaacgacgat
cacgagtttgtgcgtcgtaaccgccgcgaccgtagcgatcgcaacgatcgcgataaccgt
aatgatcgcaacgatcgccgtaaccgccgcatgcgtggccgtgatcgcgacaacgccgat
gatgatcgtcgctatgatgatcgcgataatcgtagcgatcgcaatgaccgtgatagccgc
cgcgaagagccgcaggaggatctggtgccggtggccggcatcgtcgatgtgctcgactcc
tacgcttttgtgcgcacttccggctacctgcccggcccgaacgacgtgtacgtttccatg
ggccaggtcaagaagtacggcctgcgcaagggcgatgccgtccatggttcgattcgcgcc
ccgcgcgaaggcgatcgtcgcaaccaacgccagaagttcgtgccactgcaggccatcgat
tccatcaacggccaaagcgttgaagaagcgctcaaccgtccgcagttctccaagctcacg
ccgctgtacccgcaggagcgtttgaagcaggaaaccgccccgaacaagctcaccggccgt
atcatggacatcgtttccccgatcggcaagggccagcgtggtctgattgtctccccgccg
aaggccggtaagaccatcaccctgcagaacatcgccaactccatcgccgccaacaacccc
gaggtccaccttatggtggtgctcgtggacgagcgccccgaagaggtcaccgatatggag
cgcacggtccagggcgaggtcatctcctccaccttcgaccgtccggcctccgatcacacc
acggttgccgaactggccatcgaacgcgccaagcgtcttgtggagctcggccaggacgtg
gtcgtactgctcgattccatgacccgactggctcgcgcttacaacatcgccgcccccgcc
tccggccgcatcctgtccggtggtgtggacgcgcaggccctctacccgccgaagaagttc
ttcggcgcggcccgcaacatcgaaaacggcggctccctgaccatcatctcctctgcgctg
gtggaaaccggctccaagatggacgaggtgattttcgaggagttcaagggcaccggcaac
atggaactgcgcctgtcccgcgagctggcggacaagcgactgttcccggccatcgacatc
aacgcttccggcacccgccgcgaggagctcatcaccaacccgcaggaactgccgattatc
taccgtctgcgtcgactgctgggcggcatggagcccgagcaggcctaccagacgttggtg
ccgcgcctcaagaagaccgccaccaaccgcgacttcctcgccgccatcgtgcagcaggcc
aacaccggcaacgcggtcaacggcaactga
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