Bifidobacterium longum BXY01: GS08_02450
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Entry
GS08_02450 CDS
T03387
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
blx
Bifidobacterium longum BXY01
Pathway
blx03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
blx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GS08_02450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
blx03021
]
GS08_02450
03400 DNA repair and recombination proteins [BR:
blx03400
]
GS08_02450
Enzymes [BR:
blx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GS08_02450
Transcription machinery [BR:
blx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GS08_02450
DNA repair and recombination proteins [BR:
blx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GS08_02450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AIF90041
UniProt:
A0A7U4H4T3
LinkDB
All DBs
Position
570807..574844
Genome browser
AA seq
1345 aa
AA seq
DB search
MLDVNAFDKIRIGLATADDIRGWSHGEVKKPETINYRTLKPEKDGLFGEQIFGPTRDWEC
ACGKYKRVRFKGIVCERCGVEVTRSRVRRERMGHIELAAPVTHIWFFKGVPSRLGYLLNV
TPKDLERVIYFASYMVTEVNEDERHNDLPGLQDEFDSEIKRLEQRRDSDIEARAKKVEED
LAALEETGEAKGPARTKLRNGAERDMAAIRTRYNDQIARVDAVFDKFKKLKPGDMVDDVD
LWREMQDRYGDYFDGCMGAEAIKKRLQSLDLETISKELREEIKDASEQRKTKALKRLKVV
NAFLTTGNKPEAMVLDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIE
LGAPEIMLNNEKRMLQEAVDSLFDNGRRGRPVTGASNRPLKSLSDMLKGKQGRFRQNLLG
KRVDYSGRSVIVVGPSLRMHQCGLPKPMALELFKPFVIKRLVDLNYAQNMKSAKRLVDRG
DAEVWGVLEEVISEHPVLLNRAPTLHRLGIQAFEPILVEGKAIHLPPLACAAFNADFDGD
QMAVHLPLSAEAQAEARSLMMASDNILKPADGHTVTMPSQDMILGLYYLSTVLEGAKGQG
RVFSSLEEAEMALDRHEIDMQAKVLIRLPESFVLPKNWEPGEVKVLDPREGEDEVVKEER
FHDGTVLFATSYGRILFNETLPTDYPFVNEQVAKGRLSKIVDDIAMRYSTQQVAATLDAL
KDLGFTRAPWSGVSFAFSDVNEPPERDEKIAEYEAKADKVNANYEMGLLTEEARRQELID
LWTECTAEVSKEVEEKFDPTSNLAIIVQSGARGNMMQINQIAGMRGLVANPKGEIIPRPV
KSNYRDGLSVLEYFISQHGARKGLADTALRTAESGYLTRRLVDVSQDVIVREEDCGTKAG
LPIRVAERDNDGNLVLVKAADGGPYSRLLAADVIDPADGQTVLYKRDDALSMDVLNDLVA
HGVEEVKCRSVLTCESKRGVCAKCYGWSLATNKLVDVGETVGIVAAQSIGEPGTQLTLRS
FHSGGVAAASDITQGLPRVTELFEARTPKGEAPITEFAGSIKIVENDRGRQIILTPDADS
GAPKEDGVIKPITYQVSKRVPLKVADGDHIKVGTQLVEGSVDPKKILTILGKRAAQVNIV
EEVHTVYRSQGVDIHDKHIEVIVHQMTRRVTIIDSGDTDLLPGELVDNARFREINRNIVK
NGGRPAVGRPALMGITKASLATDSWLSAASFQETTRVLTEAALSEKVDDLKGLKENVIIG
KLIPAGTGLARYRNAVVEPDKAIRDTIYPNFGLGGDGDLGDASFSDADLSDLNFSNLEFG
DLKLGDDFNPDDFYSDQGGQPDIEE
NT seq
4038 nt
NT seq
+upstream
nt +downstream
nt
gtgctggacgtcaacgcatttgacaagattcgcatcggccttgccaccgccgatgacatc
cgtggttggagccacggtgaggtcaagaagcctgaaaccatcaactaccgtacgctgaag
cctgagaaggacggtctgttcggcgaacagatcttcggcccgacccgtgactgggagtgc
gcctgcggcaagtacaagcgcgtgcgcttcaagggcatcgtctgcgagcgatgcggcgtc
gaagtgacccgtagccgcgtgcgccgtgagcgcatgggccacatcgagctcgccgccccg
gtgacgcacatctggttcttcaaaggtgtgccttcccgcctcggctacctgctgaacgtc
accccgaaggatctggagcgcgtgatctacttcgcctcctacatggtcaccgaggtgaac
gaggacgagcgtcacaacgatctgcccggcctgcaggacgagttcgattccgagatcaag
cgccttgagcagcgccgtgactccgacatcgaagctcgcgccaagaaggtcgaagaggat
ctcgccgcccttgaggagaccggcgaggccaagggcccggcccgcaccaagctgcgtaac
ggtgccgagcgcgatatggccgccatccgcacccgctacaacgaccagatcgcccgtgtg
gacgccgtcttcgacaagttcaagaagctcaagcccggcgacatggtcgacgacgtggac
ctgtggcgcgagatgcaggaccgctacggcgattacttcgacggctgcatgggcgccgaa
gccatcaagaagcgcctgcagtcccttgacctggagaccatctccaaggaactgcgcgag
gagatcaaggacgcttccgaacagcgtaagaccaaggccctgaagcgtctcaaggtcgtc
aacgccttcctgaccaccggcaacaagccggaggccatggtgctcgacgtgatcccggtc
atcccgccggacctgcgtccgatggtccagctcgacggtggccgtttcgccacctccgac
ctcaacgacctgtaccgccgtgtgatcaaccgtaacaaccgtctgaagcgactgatcgag
ctcggcgcccctgaaatcatgctcaacaacgagaagcgcatgctccaggaagccgtcgac
tccctgttcgacaacggccgtcgtggtcgcccggtcaccggtgcctccaaccgtccgctg
aagtccctgtccgacatgctcaagggtaagcagggtcgtttccgtcagaacctgctcggt
aagcgagtcgactactccggccgttccgtgatcgtggtcggcccgtccctgcgcatgcac
cagtgcggtctgccgaagccgatggccctcgagctgttcaagccgttcgtcatcaagcgc
ctcgtggacctgaactacgcgcagaacatgaagtccgccaagcgtctcgtggaccgcggc
gacgccgaagtgtggggcgtgctcgaggaggtcatctccgagcaccccgtgctgctcaac
cgtgcacctacgctgcaccgtctgggtattcaggcattcgagccgatcctggtggaaggc
aaggccatccacctgccgccgctggcctgcgccgccttcaacgccgacttcgatggtgac
cagatggcagtccacctgccgctctccgccgaagcccaggctgaggcccgctcgctgatg
atggcttccgacaacatcctgaagccggctgacggtcacaccgtgaccatgccgtcccag
gacatgatcctcggtctgtactacctgtccaccgtgctggaaggcgccaagggccagggc
cgcgtgttctcctcgctggaagaggccgaaatggccctcgaccgccacgagatcgacatg
caggccaaggtgctcatccgcctgcccgagagcttcgtactgccgaagaactgggagccc
ggcgaggtcaaggtgctcgacccgcgcgaaggtgaggacgaggtcgtcaaggaagagcgc
ttccacgacggcaccgtgctgttcgccacctcctacggccgcatcctgttcaacgagact
ctgccgaccgactacccgttcgtcaacgagcaggtggccaagggccgtctgtccaagatt
gtcgacgacatcgccatgcgttactccacccagcaggtggccgccacgctggatgccctg
aaggatcttggcttcacccgtgcaccgtggtccggcgtgtccttcgcgttctccgacgtg
aacgagccgcccgaacgcgacgagaagatcgccgagtacgaggccaaggccgacaaggtc
aacgccaactacgagatgggtctgttgaccgaggaagctcgtcgtcaggaactcatcgac
ctgtggaccgagtgcaccgccgaggtgtccaaggaagtcgaggagaagttcgacccgacc
tccaacctggccatcatcgtgcagtccggtgcacgaggcaacatgatgcagatcaaccag
atcgcaggtatgcgaggcctcgtggctaacccgaagggtgagatcattcctcgtcctgtg
aagtccaactaccgcgacggcctgtccgtgctggagtacttcatctcccagcacggtgca
cgcaagggtctggccgataccgcactgcgtaccgcagaatccggttacctgacccgtcgt
ctggtcgatgtctcccaggacgtcatcgtgcgcgaagaggactgcggcaccaaggccggt
ctgcccatccgtgtcgccgagcgcgacaacgacggcaacctggtgctcgtcaaggccgcc
gacggtggcccgtactcccgtctgctcgccgccgacgtcattgacccggccgacggacag
accgtgctgtacaagcgcgacgacgccctgtccatggacgtgctcaacgacctcgtggcc
cacggtgtcgaggaagtcaagtgccgttccgtgctgacctgcgagtccaagcgcggtgtg
tgcgccaagtgctacggctggtccctggccaccaacaagctggtcgatgtcggcgagacc
gtcggtatcgtcgccgcccagtccatcggtgagcctggcacccagctgacgctgcgttcc
ttccactccggcggtgtggccgcggcatccgatatcacccagggtcttccccgtgtcacc
gagcttttcgaggcgcgtaccccgaagggcgaggcgccgatcaccgagttcgccggcagc
atcaagatcgtggagaacgatcgcggtcgccagatcatcctgaccccggacgccgattcc
ggcgcgccgaaggaagacggcgtgatcaagccgatcacctaccaggtctccaagcgcgtg
ccgctcaaggttgccgacggcgaccacatcaaggtcggcacccagctggtcgaaggttcc
gtggatcccaagaagatcctcaccatcctcggcaagcgcgccgcccaggtcaacatcgtg
gaggaagtgcacaccgtgtaccgctcccagggtgtggatatccacgacaagcacatcgag
gtcatcgtgcaccagatgacccgccgcgtgaccatcatcgactccggcgacaccgacctg
ctgccgggtgagctggtggacaatgcccgcttccgcgagatcaaccgcaacatcgtcaag
aacggtggccgtccggccgtcggtcgtccggcgcttatgggcatcaccaaggcgtcgctg
gccaccgactcctggctgtccgccgcgtccttccaggagaccacccgcgtgctcaccgaa
gccgccctctccgagaaggtcgacgacctcaagggcctcaaggagaacgtcatcatcggt
aagctcatcccggccggtacgggcctcgcccgctaccgcaacgccgtggtcgagcccgac
aaggccatccgcgacaccatctacccgaacttcggtctgggcggcgatggcgatctcggc
gacgcgagcttctccgatgccgacctgtctgacctgaacttctcgaatctcgagttcggc
gatctgaagctcggcgacgacttcaacccggatgatttctactccgatcagggcggtcag
cctgacatcgaggagtaa
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