Bifidobacterium longum BXY01: GS08_02560
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Entry
GS08_02560 CDS
T03387
Name
(GenBank) ATP-dependent DNA helicase UvrD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
blx
Bifidobacterium longum BXY01
Pathway
blx03420
Nucleotide excision repair
blx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
blx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GS08_02560
03430 Mismatch repair
GS08_02560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
blx03400
]
GS08_02560
Enzymes [BR:
blx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GS08_02560
DNA repair and recombination proteins [BR:
blx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GS08_02560
MMR (mismatch excision repair)
Other MMR factors
GS08_02560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
DEAD
AAA_30
XdhC_CoxI
Motif
Other DBs
NCBI-ProteinID:
AIF90060
UniProt:
A0A7U4H4V2
LinkDB
All DBs
Position
609459..613481
Genome browser
AA seq
1340 aa
AA seq
DB search
MSTFTPSAEQAAIIDAPVNADVLVVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTR
KAAGELLERVSAAVAGDMAGSTTATVSDRAFLKPAIFTYDAFFQTIVRQYGLLVGFDQNT
QPLSAAGALQLATEVIDSHMDLAFSEDFGAFSSLANRVLALSDAIGSAMIGAGCTSFDDA
INQVRQWDSAFINRLQQAVADEPMPEDEPKIPKIKRLKKDTDASWQAKLDDRAEHLHARC
AYHCGALLETTRKRDILLQLVEAYAQAKRERNMAEFSDFTIAAYQLIERFPSIGERTRRR
YSHVLLDEYQDTSTTQAALLAALFHVDASQRSAVNAVGDPFQSIYAWRGASPGAFRMFQQ
DFHLPAGYKPFPLSVTRRNSRIVLEAANNLTLPLRSNPSRPSSSLMREVDVSSLDPMPDA
PEGTLGVLGFATAGQEIDAVVRFCKTAIARHRSAAEQQEQMPGEQKVPVAVLFRSKSHMP
EYQAALEQAGLTTFVVGYSALLERPEIRDLMALLHVAADHTDTGSLMRLLATPRFTMSAA
DLTMLARFAEEQNMEQRFQALVQAGLAQPDTPANEWAAVVREYRDQVANAVFLPDVLLRG
DLVKLLERLSAHGRNAITRAAVMLRQVHDAVGRPLGDVIRAGIEALDLDIDTVLAGVLHN
PQHRANPALAHMPMDAIVDLVDTYTQEIAAEQTPSLHGFITWVDHLASVEDEAASLPDAP
VDVELMTVHQSKGLEWDAVAVVGLTAGGFPSNQGDHLKIVLDEHHTGGTEQGHWTAPEYH
ETADSWLTNPTAVPVPMRADAGILPRFPHDADVEADPIASLAALDDVELIDDEVFGSMRE
FGDGVEEVDASGWYLTQAEEYGRRLHADERRLMYVALTRAREDALMTYCAYTGESGRDPS
VVPKGSRAAQPSNFWLEVHDALQAREHAISAQDCVERLQAANAGKPMLISAQGEAIAPPE
GFFIGEHAAAYSDAVVGEAWQTPITQTNAAAELPWPATLSDAVHEQLSRGIDVIAADSSS
LEQHQDAGPLLQRAQLLVDDADLMADAASGQSLDEAVKAKAQRVLAAGRQNVTSLQARVG
GMNEREERLYWRSIIRPIPRISSPAAEAGTQFHAWAEQFINAGKPDEAVLAYEAEPSMPH
TGQDAGFVSREAMLADLAERERQCRKPSTRQPAVPQPTAQQSVSAVSATSISSDNATESK
LVAWQRRLAESSWAKRIPAWTERAIVVDVPGVGLVNGKLDAVFIGGLDPSSTTVRFTVVD
WKTGRRPTKPDDITRKLAQLDMYRLLLAAVEGVELDSIDATLYYVSEPDEGLRELHARAK
TKQEILTELSSGIPEQSDND
NT seq
4023 nt
NT seq
+upstream
nt +downstream
nt
atgagcacgttcactcccagtgcggaacaggccgccatcatcgatgcgccagtcaatgct
gacgtactggtggttgccggggccggttccggcaaaacctttacgatgacccaacgcatc
atcgcgcttatcaatcgaggtgtggcacctgaacgcatccttggcctgaccttcacgcgc
aaggccgcaggcgaactgctggaacgcgtctccgccgcagtggccggtgatatggcgggc
tctacgaccgccacggtgtctgatcgggcattcctcaagccggccattttcacgtatgac
gccttcttccagaccatcgtgcgccaatatggactgcttgtcggattcgatcagaacacg
caaccattgagcgcagccggagcgcttcaactggccaccgaagtcatcgacagtcacatg
gatctggcgttcagtgaggattttggcgccttctccagtttggcgaaccgtgttctggcg
ttgtcggatgccattggcagtgccatgatcggtgccggctgcaccagcttcgatgatgcg
atcaatcaagtacggcaatgggattcggcattcatcaatcgattgcagcaagccgtcgca
gacgaacccatgcccgaggacgagccgaaaatccccaagatcaaacgactgaagaaagat
accgacgccagctggcaagccaagctcgatgaccgtgccgaacatttgcacgcccgctgc
gcctatcattgcggtgcgctgctggagaccacacgcaaacgcgatattctgctccagctg
gtggaggcctatgcccaagccaagcgggaacgcaatatggccgaattctccgacttcacc
attgccgcgtatcagcttatcgagcgcttcccctccatcggagagcgcacgcgccgcagg
tacagccatgtgctgctcgacgaatatcaggacacctccaccacgcaggccgctctgctg
gcagcactgttccatgtggatgcgtcacagaggtccgccgtcaacgcggtgggtgatccg
ttccagtcgatttacgcatggcgtggtgccagccctggtgcattccgtatgttccagcaa
gatttccacctgcctgccggatacaagccattcccattgtccgtcaccaggcgcaacagc
cgtatagtgctcgaagccgccaataatctcacgctgccgttgcgctccaatccgtcgcgt
ccctccagctcattgatgcgtgaggtcgatgtctcatcgcttgaccccatgcctgatgcc
cctgaaggaacattgggagtactgggcttcgccacggccgggcaggagatcgacgccgta
gtgcgtttctgcaagacggccatcgcacggcaccgttccgcagccgaacaacaggaacag
atgccgggcgaacagaaagtgccggtcgccgtgctgtttcggtccaaatcacatatgccc
gaatatcaggcggcattggaacaggccggattgaccacattcgtggtcggctattccgcg
ttgttggaacgtccggaaatccgcgatctgatggcgttgctgcacgtggccgccgaccac
accgatacgggatcgctgatgcgcttgctggccacgccacgattcaccatgtccgcagcg
gatttgaccatgttggcccgttttgctgaagaacagaacatggaacaacgcttccaagca
ttggtgcaggccggccttgcacaaccggatacaccagcgaatgaatgggcggctgtggtg
cgtgagtaccgcgaccaggtggccaatgcggtattcctgccagatgtattgctacgcggc
gacctggtaaaactgcttgaacggttgagcgcacacgggcgcaacgccataacccgggcc
gcggtgatgctccgtcaggtgcatgatgccgtcggacggccactgggcgacgtgattcgc
gccggcatagaagcgttggatcttgacatcgacaccgtattggccggtgtgctgcataat
ccgcagcaccgcgccaatcccgctttggcgcatatgcctatggatgcgattgtggatttg
gtggatacgtacacgcaagagattgccgctgagcaaactccctcgttgcatgggttcatc
acatgggtggatcatctggcttcggtggaggatgaagccgccagtctccccgacgctccg
gtggatgtggaactgatgaccgtacaccagtccaaagggttggaatgggatgccgttgcg
gtagtggggcttaccgccggcggattccccagcaatcagggcgaccatctcaagatcgtg
ctggacgaacaccatacgggaggcaccgagcaaggtcactggaccgcacccgaatatcat
gagaccgccgactcctggctcaccaaccccaccgccgtgcccgtgcctatgcgcgccgat
gccggcattttgccgcgattcccccatgatgccgatgtggaagccgaccccatcgcatcg
ttggcggctttggatgatgtggagcttatcgatgatgaagtgttcggctccatgcgcgaa
ttcggcgatggcgtggaagaagtggatgcatccggctggtatttgacgcaggcggaggaa
tatgggcgtcggctgcatgccgacgaacgtcgattgatgtatgtggcgcttacccgtgcg
cgggaagatgccctgatgacctattgcgcctatacgggcgaatccgggcgggacccgtca
gtggtgcccaaaggctctcgcgccgctcagccatccaatttctggcttgaagtgcatgac
gcgctccaagcccgtgaacatgcgatatcggctcaggactgtgtggaacggctgcaagcc
gccaatgccgggaagcccatgctgatctcggcgcaaggcgaagcgattgcccctcccgaa
gggttctttatcggagagcatgccgcggcatacagtgacgccgtggtgggggaggcgtgg
caaacgccgattacgcagacgaatgccgccgccgaattgccgtggccggctaccctcagc
gacgcggtgcatgaacagctgtcacgcggcatcgatgtcatcgccgcagattcctcgtca
cttgagcagcaccaagacgccggcccactcctgcaacgggcacaattgctggtggacgac
gccgatttgatggccgatgccgccagcggccagtcgcttgatgaggcagtcaaagccaag
gcgcaacgcgttctggctgcaggacgccagaacgtgacaagcctgcaagcccgcgtaggt
ggcatgaacgaacgggaggagcgcctctactggcgtagcattatccgcccgattccgcgc
atatcgtctccggcggccgaagccggcacgcagttccatgcgtgggccgagcaattcatc
aatgccggtaaaccggatgaagcggtactggcatatgaagccgaaccaagcatgccgcat
acaggtcaggatgcgggattcgtttcccgggaagccatgttggccgatttggccgaacgg
gagcggcaatgccgcaagccatccacacggcagcccgctgtcccacagcccacggctcaa
caatccgtatccgccgtatccgccacttccataagcagcgacaatgccaccgagtccaag
ctggtggcgtggcagcgcagactggccgaatcatcgtgggccaagcgcatcccggcgtgg
acggagcgtgccatcgtcgtagacgtgccgggcgtgggcctggtcaatggcaaactcgat
gcggtattcatcggtggacttgacccgtccagcaccaccgtacgctttaccgtggtcgac
tggaaaaccggtcgtcggcccaccaagccagacgacatcacccgcaaactcgcccagctc
gacatgtaccgactgctgctggcagcggtcgaaggtgtggaattggacagtatcgacgcc
actctctactatgtcagtgagcccgacgagggcttgcgcgagcttcacgcccgcgcgaaa
accaaacaggaaatccttaccgagttgagctccggcattcccgaacaatctgacaacgac
tga
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