Bifidobacterium longum BXY01: GS08_02795
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Entry
GS08_02795 CDS
T03387
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
blx
Bifidobacterium longum BXY01
Pathway
blx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
blx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GS08_02795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
blx03019
]
GS08_02795
03400 DNA repair and recombination proteins [BR:
blx03400
]
GS08_02795
Enzymes [BR:
blx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GS08_02795
Messenger RNA biogenesis [BR:
blx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GS08_02795
DNA repair and recombination proteins [BR:
blx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GS08_02795
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
HRDC
RQC
RecQ_Zn_bind
ResIII
Rhodanese
Motif
Other DBs
NCBI-ProteinID:
AIF90106
UniProt:
A0A7U4H4X3
LinkDB
All DBs
Position
672246..674198
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AA seq
650 aa
AA seq
DB search
MTAHQAALEALTRYFGYDSFRPGQQGIVEALLAGRDVLGVMPTGAGKSVCYQIPAALSPG
ATLVISPLISLMRDQVDALNDLGLPAAFINTTQTPDEQAMVFAQAAAGQIKLLYVAPERL
ETGRFRDFAARTPISLIAVDEAHCVSQWGQDFRSSYLGIGDFIAGLPQRPPVGAFTATAT
ERVRRDIVGLLGLRNPAVTVTGFDRPNLYFDVVKLETKYKAAWVARYVADHPDESGIVYC
ATRKTTEALADTLNQMGHPAVAYHGGMSPDAREAAQRDFITDKVPVVVATNAFGMGIDKS
NVRYVIHHNLPESIEAYYQEAGRAGRDGEPSRCTLLWNETDIVTRRRLLDNDYENERLTP
EEQEIVRQSKRRLLDGMVGYCRTTDCLHRYMTRYFGQELSPNAGSAAGEDIAADSSQSGR
CGACSNCESTFETIDVTRVAQAISRCVHDVGQRVGSGKIVKILRGSRAQDLAWLNPERMP
TFGMLKDVNEARVRDVLSQMATDGYLSIAEGRMPIVMFGARAAETAAPDFHYEIKRVERK
SAAAGSGRSGGVADTADSANVPGALGSYIPDDDEESLFQKLRELRRTIAQEIGKPPYIVF
SDKTLRDMARIKPVTNAQFLAVNGVGQHKLDLYGQRFMQTIASFNAGSAS
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgacagcacatcaggcggcgctggaggcgctcacacgatacttcggctatgactcgttt
aggcccggacagcaaggaattgtcgaggctttgcttgccggacgcgatgtcttgggcgtg
atgcccaccggcgcaggcaagtccgtgtgctaccagattcccgccgcgctcagcccgggt
gcgactttggtcatatctcccttgatttccctgatgcgcgaccaggtcgatgcgctgaac
gacctcggtctgccggccgcgttcatcaacaccactcaaactcccgacgagcaggcgatg
gtgttcgcccaagccgccgccggacagatcaaactgctgtacgtggccccggaacgcttg
gaaaccgggcgattccgcgactttgccgcccgtacgccgatctcgctgatcgccgtggac
gaagcccactgcgtctcccagtggggtcaggacttccgctcgtcgtacttaggtatcggc
gatttcatcgccgggctgccgcagcgtccaccggtgggtgcgttcaccgccaccgccacc
gaacgggtgcgccgggacatcgtgggactgctgggattgcggaatccggccgtcaccgtc
accggattcgaccggccgaacctgtattttgatgtggtcaaactggagaccaaatacaag
gccgcatgggtggcgcggtatgtggccgaccatccggacgaatccggcatcgtctactgc
gccacccgcaagaccaccgaagcgctcgccgacacgctgaaccagatggggcatccggct
gtcgcctaccatggcggcatgtcgccggacgcgcgtgaggcggcccagcgcgacttcatc
accgacaaggtgccggtggtcgtggccaccaacgctttcggcatgggcatcgataagtcc
aacgtgcgttacgtcatccaccacaatctgcccgaatccattgaagcctactatcaggag
gccggccgcgcgggccgtgacggcgagcccagccgatgcacgctgctgtggaatgagaca
gacatcgtcacccggcgtcggttgctggataacgattatgagaacgagcgattgactccc
gaagagcaggagatcgttcgccagtccaagcgccggctgctggacggtatggtcggctac
tgccgcaccaccgactgcctgcaccggtatatgacccggtatttcggtcaggaattgtcg
ccgaatgctggttccgcggcgggtgaagacattgcggcggactcttcgcagtccggcaga
tgcggtgcctgctcgaactgcgaaagcacgttcgagaccatcgacgtgacccgcgtggcg
caggcgatcagccgttgcgtgcatgacgtggggcagcgcgtcggttccggcaagatcgtc
aagatcctgcgcggttcgcgggcacaggatctggcatggctgaacccggagcggatgccc
accttcggcatgctcaaggacgtgaacgaggctcgcgttcgcgacgtgttgagccagatg
gccacggacgggtacctgtcaatcgccgaagggcgtatgccaatcgtcatgttcggtgcg
cgggcggccgaaaccgccgctcccgacttccactatgagatcaaacgggtggaacgcaag
tcggcggcggccggttccggtcggagcgggggagtggctgatactgccgattccgccaat
gttcccggcgcgctgggctcgtatatcccggacgatgacgaggaatcgctgttccagaag
ctacgcgaactgcgacgcaccatcgcccaggaaatcggcaagccgccgtacatcgtgttc
tccgacaagaccttgcgcgacatggcccgcatcaagccggttaccaacgcgcaatttctg
gcggtcaacggcgtcggtcaacacaagctcgacctctacggccagcgcttcatgcaaacc
atcgcctcgttcaatgccgggagtgcgtcataa
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