Bifidobacterium longum BXY01: GS08_03545
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Entry
GS08_03545 CDS
T03387
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
blx
Bifidobacterium longum BXY01
Pathway
blx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
blx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GS08_03545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
blx03400
]
GS08_03545
Enzymes [BR:
blx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GS08_03545
DNA repair and recombination proteins [BR:
blx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GS08_03545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
CBS
AAA_22
AroM
Motif
Other DBs
NCBI-ProteinID:
AIF90242
UniProt:
A0A7U4KDH4
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All DBs
Position
836254..839838
Genome browser
AA seq
1194 aa
AA seq
DB search
MAGEATHPDLINGSLVGILSGLEQDKTFLRLATGDIEVSDDVDNSVLAGIPEGLRPALAA
AIGQGVAGKPGKPVVLVVASGREAEETVGSLRSWYDGDPNDIAQLEAWETLPHERLSPRA
DTVASRMAVFRRLKHPSDTDPMFGPIRILVMPIRSLIQPVVQGLGDVEPLVFTVGEDLPL
DEAAKRLIENAYTRVDLVMDRGEFAVRGGILDVFPPTAPHPVRIEFFGDEIDTIKEFHAS
DQRTYGDGLKTIWATACRELQLTDAVRARAKALVGSIPNAEDMLESIANAIPVEGMESLM
PALVDHLEPVGSMLPKHAVILLSDPEKLRRSAEDLAKTANEFLAASWHVAASGHGAGAPI
SFDEASFLDYAETISSLEYSEHPVIRLTSFGVDTTLTGHVQLDAQNPAEFRGDEAKASQG
IEGLLDAGFHVTITAAAAGTLARLRRAINTTGIANFDVIRSQAIDGFVDKAAKIALLTER
DLTGRTSAVAVAKTPKRRRKAIDLVELKKGDYVVHEQHGIGRFIEMRQRTIGTGANKTTR
EYLVIEYTPSKRGAPADKLFIPTDQLDQVSKYIGAEAPKLNKLGGSDWAATKAKARKHVH
EIADDLIKLYSARQRARGFAFSPDTPWQKELEDAFPYQETADQLTTIDEVKSDMEKPVPM
DRLICGDVGFGKTEIALRAAFKAVQDGKQVAVLVPTTLLVQQHYETFSERFEGFPVNVAA
MSRFQTTKEINGTVEGLRSGTVDVVIGTHKLLNPKITFKDLGLVIIDEEQRFGVEHKETL
KALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPVLTYVGAYEDAQVTAAV
RRELLRGGQVFYVHNRVQDIASIADKIHTLVPEAHVGIAHGKMGEKQLDQIIRDFWHRDI
DVLVCTTIIETGLDISNANTLIVDHADRFGLSQLHQLRGRVGRGRERAYAYFLYDPSKPM
TEQSHDRLATIAQNTALGSGFDVAMKDLELRGTGNLLGDEQSGHIEGVGFDLYVRMVSEA
VEKYKEPEENVEPVAVSIDLPIEASIPIEYIDSDKLRLEAYRKLASARNEADLKDLEEEL
TDRYGKPPVEFETLFDVARLKFKARKLGISEILAQSNRVRIGRIDPPESIQMRMGRIYKG
AQYRPVTHQLIVPTPFTGSLGQGPMSSDQVVLWTNQLLDDLAWTPSSSKRQSRL
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atggccggtgaggcgacgcacccggacctgatcaacggctcactggtaggcatcctgtcc
gggctggaacaggacaagaccttccttaggctcgccactggcgacatcgaggtttcggac
gacgtcgacaactccgtcctggccggcatccccgaaggtttgcgcccggctttggccgcc
gccataggccagggtgtggccggcaaacccggcaagccggtcgtgctggtcgtggcctcc
ggccgcgaagccgaagagaccgtgggctcgctgcgctcctggtatgatggcgacccgaac
gacatcgcccagctcgaagcctgggaaaccctgccgcacgagcgtctgagcccgcgcgcg
gacaccgtggccagccgcatggccgtgttccgcagactcaagcatccgagcgataccgat
ccgatgttcggcccgattcgcattctcgtcatgccgatccgctcgctcatccagccggtc
gtccaaggactgggcgacgtcgagccgctcgtgttcaccgtgggggaggacctgcctctc
gacgaagccgccaaacgtctgatcgaaaacgcctacacgcgcgtggacctggtcatggac
cgtggcgagttcgcggtgcgcggaggcatcctcgacgtattcccgcccaccgcaccgcac
ccggtgcgtatcgaattcttcggcgacgaaattgacaccatcaaggaattccacgcctcc
gaccagcgtacctacggcgacggcctcaagaccatctgggccaccgcatgccgtgaactg
cagctgaccgacgccgtgcgcgcccgcgccaaagccttggtcggttcgattcccaatgct
gaggacatgctcgaatccatcgccaacgccattccggtcgaaggcatggaatccctgatg
cccgcgctcgtggaccatctggaaccggtgggctccatgctgcccaagcacgccgtgatc
ctcctgagcgacccggagaaactgcgccgttccgccgaagacttggcaaaaaccgcgaac
gagttcctggccgccagctggcatgtggccgcctccggccacggcgccggcgcgcccatc
agcttcgacgaagccagcttcctcgactatgcggaaaccatcagctccctcgaatactcc
gaacatccggtgattcgcctcaccagtttcggcgtggacaccacgctgaccggccatgtg
cagctcgacgcccagaacccggccgaattccgaggggatgaggccaaggcctcccaaggc
atcgaaggcctgctcgacgccggcttccacgtcaccatcaccgccgctgcggccggcacc
ttggccaggctcaggcgcgcgatcaacactaccggcatcgccaatttcgacgtcatccgc
tctcaggccatcgacggcttcgtggacaaagccgccaaaatcgccctgctcaccgaacgc
gacctgaccggccgcacttcggccgtggccgtggccaaaacgccgaaacgccggcgcaag
gccatcgacttggtggaactcaaaaaaggcgattacgtggtgcacgagcagcacggcatt
ggccggttcatcgaaatgcgccagcgcaccatcggcaccggcgccaacaaaaccactcgc
gaatacctggtcatcgaatatacgccttccaagcgcggcgccccggcggacaaactgttc
atccccaccgaccagctcgaccaggtcagcaaatacatcggtgccgaagcccccaagctc
aacaagctcggcggctccgactgggcggccaccaaggccaaggcccgcaaacacgtccac
gagatcgccgacgacctgatcaagctgtactccgcccgccagcgcgccaggggcttcgcg
ttcagcccggacaccccatggcagaaggaactggaagacgccttcccctatcaggaaacc
gccgaccagctcaccaccatcgacgaggtcaaatccgacatggaaaagcccgtgccgatg
gaccgcctcatctgcggcgacgtgggcttcggcaaaaccgaaatcgcactgcgtgccgcc
ttcaaggccgtgcaggacggcaagcaggtggccgtgctcgtgcccaccacgctgcttgtc
cagcagcattacgagacgttcagcgaacgattcgagggtttcccggtcaatgtggcggcc
atgagccgattccagaccaccaaagagatcaacgggaccgtcgagggtctgcggtccggc
acggtggacgtggtcatcggcacgcacaaactgctgaaccccaagatcacgttcaaggat
ctggggctcgtcatcatcgacgaggagcagcgtttcggcgtggaacacaaggaaacgctg
aaggcactgcgcaccaatgtggacgtgctgtccctgtccgcgacgcctatcccgcgcacg
ctggagatggccgtgaccggcatccgcgaaatgtccacgctggccaccccgcccgaagac
cggttgccggtgctgacctatgtgggagcctacgaggacgcgcaggtcaccgcggcggtg
cgccgcgaactgttgcgcggcggccaggtgttctacgtgcacaatcgcgtgcaggacatc
gcgtccatcgccgacaagatccatacgctggtgcccgaagcgcacgtcggcatcgcccac
ggcaagatgggtgagaagcagcttgaccagatcatccgcgacttctggcatcgtgacatc
gacgtgctcgtgtgcaccacgatcatcgaaacgggtcttgacatatccaacgcgaacacg
ctgatcgtcgaccatgccgaccgtttcggcctgagccagcttcatcagctgcgcggccgc
gtcggccgtggacgtgaacgcgcgtacgcctacttcctgtacgacccgtccaagccgatg
accgagcaatcccacgacaggctcgccacgatcgcgcagaacacggcgctcggctccggt
ttcgacgtggccatgaaggacttggaattgcgcggcaccggtaaccttctgggcgacgag
cagtccggccatatcgagggcgtgggcttcgacctgtacgtacgcatggtgtccgaagcc
gtggagaagtacaaggagcccgaggagaacgtcgagccggtggccgtgtccatcgacctg
cccatcgaagcgtcgattccgatcgagtacatcgattcggacaagctgcgtctggaagcg
taccgcaagctcgcctccgcccgcaacgaggccgatctgaaggatttggaagaggagctc
accgaccgttacggcaagccgccggtcgaattcgagaccttgttcgatgtggcccgtctg
aagttcaaggcccgcaagctcggcatttcggagattctcgcgcaatccaaccgcgtgcgc
atcggccgtatcgacccgcccgaatccatccagatgcgtatgggccgtatttacaaaggc
gcccaataccgcccggtcacccaccagctcatcgtacccaccccgttcaccggttccctg
ggccaaggccccatgagctccgaccaggtagttctctggaccaaccagttgcttgatgat
ttggcatggaccccgtcgtcaagcaaacggcagagccgtttgtag
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