Bifidobacterium longum BXY01: GS08_04065
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Entry
GS08_04065 CDS
T03387
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
blx
Bifidobacterium longum BXY01
Brite
KEGG Orthology (KO) [BR:
blx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
blx03016
]
GS08_04065
Enzymes [BR:
blx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
GS08_04065
Transfer RNA biogenesis [BR:
blx03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
GS08_04065
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Motif
Other DBs
NCBI-ProteinID:
AIF90333
UniProt:
A0A2N0TJU6
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All DBs
Position
949790..951091
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AA seq
433 aa
AA seq
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MSDVRDTEPRLLKEPRGGVPDVTSSLDGYHRACDALAEATGSLAADAERASGFRYGHEDW
LIQFKREGAGIALLDPVALTRAGADWNEFNDAVGDATWILHDSLMDLPGFAEIGLKPKAL
FDTEIAARLLGLHRFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDWRNYAALDVEVLIE
LETLMRRDLKAAGKDEWAAEEFSHALVAGLAPRKPHPIPWLRISRITQLSRDPRGLAIAK
SLWEERDRLARRYDIAPSLLLTDSSIIEAATNKPHNAAQFRALRSLNERVRIHTGTEQDK
MFERYAPIQRTVKPKVWKQAIDRAMALKPTQWPTMPAPEQDENGVVNAPRSMRLWQQRHP
ERYDRLQRVRRVINRIAEDTRTPAEMIIKPQILRNLCWVEDPVEVDVETFLIEQGARNWQ
VKLIAPSVSGVIM
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
ttgagtgacgtccgtgacaccgaaccccgactgctgaaagagcctcgcgggggagtgccc
gatgtcacttcgtcgctggatggctatcatcgtgcctgcgatgcgctggccgaggcgacg
ggctcgctggccgccgacgccgaacgggcgtccggattccgctatggacatgaggattgg
ctgattcagttcaaacgtgaaggtgcgggcatcgccttgcttgatcccgtcgccctgaca
cgggccggagctgactggaatgaattcaatgacgccgtgggcgatgctacatggattctg
catgattctctgatggacttgcccggattcgccgaaatcggactcaaacccaaggccttg
ttcgacacggaaatagcggcgcgattgctcggcctgcaccgcttcggtctggccgccgtc
accgaacactacctcggcatcacgctggccaaagagcattccgccgccgattggtcctac
cgtccgctgccgcgcgactggcgcaactatgcggcgctcgacgtggaggtgcttatcgaa
ctcgaaaccttgatgcgtcgtgacctgaaagccgcaggcaaggacgagtgggccgctgaa
gagttttctcacgctttggtcgcgggccttgccccgcgcaaacctcatccgattccttgg
ctgcgtatctcgcgcatcacccagctgagtcgtgatccgaggggcttggccatcgccaaa
tccctatgggaggagcgcgaccggctcgcccggcgatacgacatcgctcccagcctgtta
ttgaccgattcgtcaatcatcgaggccgcgaccaacaagccgcacaatgccgcccaattc
cgcgcactccgatccctgaacgagcgtgtgcgcattcataccggcaccgagcaggacaaa
atgttcgagcggtacgcgccgattcagcgtacggtcaagccgaaggtctggaagcaggcc
atcgaccgcgccatggccctgaagcccacccaatggcctaccatgcccgcccccgaacag
gacgaaaacggtgtggtgaacgcgccccgatccatgcgactgtggcaacagcgccatccg
gagcgttatgaccgtctgcagcgggtacggcgtgtgatcaaccgcatcgccgaagacacc
cgcacgccggccgagatgatcatcaagccacagatcctacgcaacctgtgctgggtggaa
gacccggtggaagtggacgtcgagacgttcctgatcgagcagggcgcaagaaactggcag
gtgaaactcattgcaccgtccgtaagtggcgttatcatgtag
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