Bifidobacterium longum BXY01: GS08_06830
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Entry
GS08_06830 CDS
T03387
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
blx
Bifidobacterium longum BXY01
Brite
KEGG Orthology (KO) [BR:
blx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
blx03019
]
GS08_06830
Enzymes [BR:
blx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GS08_06830
Messenger RNA biogenesis [BR:
blx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
GS08_06830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
DEAD
Helicase_C
AAA_22
AAA_19
HA2_C
SLFN-g3_helicase
T2SSE
nSTAND3
AAA_30
ResIII
Zeta_toxin
NACHT
AAA_16
SRP54
AAA_11
TsaE
AAA_23
Motif
Other DBs
NCBI-ProteinID:
AIF90829
UniProt:
A0A7U4KEF0
LinkDB
All DBs
Position
1546665..1550801
Genome browser
AA seq
1378 aa
AA seq
DB search
MKYEYPAELPVSAARDEIASAVKRSQVVIVSGQTGSGKTTQLPKILLELGRGTHGKQIVH
TQPRRIAARTVAERIASEMGVKLGDEVGYQVRFTDESSPSTRLRVVTDGILLAQIQRDPK
LTQYDTIIIDEAHERSLNIDFLLGYLTALLPQRRDLKLIITSATIDSVKFQEHFEHALHE
KVPVIEVSGRTFPVQVVYEPLGTAPALMREVPGFAVGARPGDADYDALASAIAESDSDRP
RGRSGDSYADDGITDMPTAVARACAELVIHSSHERGPRDILVFASGERDIHEFEAALRHH
YGPRADDMRRPDAIEIMPLFARLSAADQHKVFESHLHQRIVIATNVAETSLTVPGIRYVV
DPGSARISRYSKTAKVQRLPIEPISQASADQRSGRCGRVADGIAIRLYSREDYETRPRFT
EPEILRTSLGAVVLHMLSVGVARTAEDVTNFGFIDPPDMKAVSDGFNELTELKAIGRKRG
EVTLTHTGRQLARIPIDVRLGRMVIEAAKTGSPNLLAQVLVVVAFLSLQDPRERPDDKRE
DADRIHNRYADETSDFLTALNIWDRVFQADGDPSNNALRRICKTEYLSWLRIRQWKDLVS
QLRQMCKELKFKVGDPLPASRPGLEIRQMPLNQQAAHSLCCSWDADGIHKSMLAGLLSMM
GMQVVREPKASDFAGLTGAARARAMKRAQKQSKNDYQGARGTRFALFPASAVAKKTPSWV
MSTELVETSRLWARYSAAIDPAWAEPLAGQLTRTTYAEPHWSGSRGSAVATARVLLYGLP
IVQDRAVQWGRINPLEARDFLIRQGLVEGDIQQRFSYDDFVGKNRDILEDAADDASRTRQ
LADTVSDEDLFDFYNAVIPNDVTSVADLAKWWKSEHDRQPNLLDFDPAKVERLASSDSVS
LDDYPDHWHTTGSDGQPIDLRLSYVYDPADPADGVTVHVPLKALSRITPDQFTWNVPGLL
DELILSMIKALPKQLRVQFVPAPDAARAIRDWIDEHYPDLPGSGSQQKPNLPPVDEDGTT
VGWPDLAHVFTKAAIATKGAQIHPEVLGPELVERLSPYLRVTFSVEQQLPAGKHPRGRRH
ARGPVKVLGVSKDLKALQRKFAAQAEASARQMVKKQADQAGEQGKLVSQANLLHKAGATT
ESRATMLWRGALDALRLPAERISSRWLGTEALMLASAPYKFTKDLVEDLQLATVKRLMPN
VDRLSDDEALANAVLDVREVYEDTVYQVAHDVIAVLKAYAEVDKATGGKADLPMLSVLQS
IRDHIATLVYPGFVGRTPPDALKSLSRYLRADLSRLNKAKTDKNRDVKWAWQADEARQVV
DKALARAKAEPAGPKHEALMKQAEQARWMLEEFYVSLWAQELGTKGPASLNRIKKALA
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atgaaatatgagtatcctgcagaacttcccgtatctgccgcgcgtgatgagatagccagc
gcggtcaaacgttcccaagtcgttattgtgtccggccagaccggttcgggcaaaaccaca
cagctgccgaagatcctgcttgagcttggccgtggcacgcacggcaagcagatcgtgcac
acccagcctcgccgtatcgccgcgcgcacggtggccgaacgtatcgcctcggagatgggc
gtgaagctcggtgacgaggtcggctatcaggtgcgtttcaccgacgaaagctcgcccagc
acgcgattgagagtcgtgaccgacggtattctgctcgcccagatccagcgcgatccgaaa
ctcacccaatacgatacgatcatcatcgacgaggcgcatgagcgcagtcttaacatcgac
tttctgctcggctatctgacggcactgctgcctcagcgccgcgatctgaagctcatcatc
acctccgcgaccatcgattcggtcaagttccaggagcatttcgagcacgccttgcatgag
aaggtgccggtaatcgaggtttccggccgcaccttccccgtgcaggtggtctatgagccg
cttggcaccgcgcccgcgttgatgcgcgaagtgccgggattcgcggtgggcgcccgcccc
ggcgacgccgattacgacgcgctggccagcgccatcgcggaatccgattccgaccggccc
cgcggccggtccggcgactcctatgccgatgacggcatcaccgatatgcccacggccgtg
gctcgagcctgcgccgaactggtgatccactcctcccatgagcgcggtccccgcgatatt
ctggtcttcgcttccggcgagcgcgacatccacgagttcgaggccgcactgcggcatcat
tacggtccgcgcgccgacgacatgcgccgaccggacgccatcgagatcatgccgctgttc
gcgcgattgtccgccgccgaccagcacaaggtgttcgaatcgcatttgcatcagcgcatc
gtcatcgccaccaatgtggctgagacctcgctgaccgtgcccggtatccgctacgtggtg
gaccccggttccgcccgtatctcccggtattcgaagaccgcaaaggtccagcgtctgccg
atcgagccgatcagccaggccagtgccgaccagaggtccggccgatgcggccgcgtggcc
gacggcatcgcgatccgcctgtattcgcgtgaggattacgagacccgaccgcgcttcacc
gagccggaaatcctgcgtacctcgctgggtgccgtggtgcttcacatgctgtcggtgggc
gtggcccgcacggccgaggacgtcacgaacttcgggttcatcgatccgccggatatgaag
gccgtgtcggacggtttcaatgagctcaccgagctcaaggccatcggccgaaagcgcggc
gaggtgacgctcacccataccggccgtcagctggcgcgcatccccatcgacgtgcgtctg
ggacgtatggttatcgaggccgcgaaaaccggttcgccgaatcttctggcccaggtgctc
gtggtcgtggcgttcctgagcttgcaggacccacgtgaacgcccggacgacaagcgtgag
gatgccgaccgtatccacaaccgatatgcggatgagacctccgatttcctgacggccctg
aacatctgggatcgcgtgttccaagcggacggcgacccgagcaacaacgcgctgcgccgt
atctgcaaaaccgagtatctcagctggctgaggatacgccagtggaaagatctcgtctcc
cagctacgccagatgtgcaaggagctgaagttcaaggtcggcgacccgctgcccgcctcc
cgcccaggcttggagattcgccagatgccgttgaatcagcaggccgcgcattcgctgtgc
tgctcgtgggatgcggatggcatccacaagtcgatgctcgccggattgctgtcgatgatg
ggcatgcaggtggtgcgtgagcccaaggcatccgatttcgcggggctgaccggtgcggcg
cgcgcccgtgcgatgaaacgcgcccagaagcagtcgaagaacgattatcagggcgcgcgc
ggcacccgtttcgccctgttccccgcctccgccgtggccaagaagaccccgtcatgggtg
atgagcaccgaactggtggagacctctcgcctgtgggcccgctattcggcggccatcgac
ccggcgtgggccgaaccgttggccggccaattgacccgcaccacgtatgcggagccgcac
tggtcgggttcgcgtggctcggctgtggccaccgcgcgcgtgctgctgtatggtctgccg
atcgtacaggaccgtgccgtgcagtggggacgcatcaatccgcttgaggcgcgcgacttc
ctgattcgccagggtctggtcgagggcgatattcagcagcgcttcagttacgacgacttt
gtgggcaaaaaccgtgacattctcgaggatgccgccgatgacgcgagccgcacccgccag
ctggcggacaccgtgtccgacgaggatctgttcgacttctacaacgcggtcattcccaac
gatgtgaccagcgtggccgatctggcgaaatggtggaagtccgagcatgaccgtcagccg
aatctgcttgatttcgacccggccaaggtggagcgtctggcatccagcgattcggtgagt
ctggacgattaccccgaccattggcatacgaccggatcggacggccaacccatcgacctg
cgtttgagctacgtatacgatccggccgacccggccgacggcgtcaccgtgcatgtgccg
ttgaaggcgctctcgcgtatcacgcccgaccagttcacatggaatgtgccgggcctgttg
gatgagctgattctgtcgatgatcaaggcgctgcccaagcagctgcgcgtccagttcgtg
ccggccccggatgccgcgcgtgcgattcgtgactggatcgacgagcattacccggatctg
ccgggctcgggctcgcagcagaagccgaatctgccgccggtggatgaggatggcacgacc
gttggctggcctgatttggcacatgtgttcaccaaggcggccatcgccaccaagggtgcg
cagattcatcccgaagtgttggggccggaactggtcgagcgtctttccccgtatctcagg
gtcacgttctcggtggagcagcaactgccggccggcaagcaccctcgtggacgccggcat
gcgcgcggccccgtcaaggtgctgggtgtgtccaaggatctgaaggcgctgcaacgcaag
ttcgccgcgcaggcggaggcgtcggcccgtcagatggtcaagaagcaggccgatcaggct
ggagaacagggcaagctggtcagtcaggcgaacctgttgcataaggcgggtgccaccacc
gagtcccgggccacaatgctctggcgtggcgcattggatgcgctgcggttgccggccgaa
cgcatttcgtcgcgctggctgggtaccgaggcgttgatgctggcttctgctccgtacaag
ttcaccaaggatctggtcgaagacctgcagctggccacggtcaaacggctgatgccgaat
gtcgacaggctctcggacgatgaggcgttggccaatgcggtgctcgatgtgcgcgaagtg
tacgaggacaccgtctatcaggtggcgcatgacgtgatcgccgtgctcaaggcttatgcc
gaagtcgacaaggccactggcggcaaggctgatctgccgatgctttcggtgttgcagtcg
attcgcgaccatatcgccacgctcgtctaccccggattcgtcgggcgtactcccccggat
gcgctgaagtcgttgagccgatatttgagagccgatctgagccgactcaataaggcgaaa
accgataagaaccgtgacgtcaagtgggcctggcaggccgacgaggcccgtcaggtggtc
gataaggcgttggcccgtgccaaggcggagccggccggcccgaagcatgaggcattgatg
aagcaggccgaacaggcccgttggatgcttgaagagttctacgtgtccctatgggcgcag
gagcttggcaccaaggggccggcttcgctcaaccgtatcaagaaagcgctggcgtga
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