Bifidobacterium longum BXY01: GS08_09295
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Entry
GS08_09295 CDS
T03387
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
blx
Bifidobacterium longum BXY01
Pathway
blx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
blx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GS08_09295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
blx03019
]
GS08_09295
03016 Transfer RNA biogenesis [BR:
blx03016
]
GS08_09295
Enzymes [BR:
blx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
GS08_09295
Messenger RNA biogenesis [BR:
blx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
GS08_09295
Transfer RNA biogenesis [BR:
blx03016
]
Prokaryotic type
tRNA degradation factors
GS08_09295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH_2
PCB_OB
DUF1773
S1_2
Motif
Other DBs
NCBI-ProteinID:
AIF91279
UniProt:
A0A7U4Z5T8
LinkDB
All DBs
Position
complement(2123433..2126177)
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AA seq
914 aa
AA seq
DB search
MEGPEIKAVEAVIDNGSFGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKE
NYDFFPLTVDVEEKMYAAGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQ
VVETVLAVNPDDAYDVIALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERER
AVFEIVVAGRVIENGDVAIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKV
ICEAQDELKKIAAKETKEFQLFPEYTDELYARIDEIAHQDLNEALSIAEKLPRQDRIHEI
KEHVREVLADEFTDMDDAEKDKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSA
EVDIVPRVHGSALFQRGETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGE
TGRVGSPKRREIGHGALAEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLS
LLAAGVPLKAPVAGIAMGLVSGDVDGKHIFKTLTDILGAEDAFGDMDFKVAGTSEFITAL
QLDTKLDGIPADILAAALQQAKEARATILEVINECIDGPAEMSEFAPRIITTTVPVEKIG
EVIGPKGKMINQIQEDTGAEIAIEDDGTVFISSEGGEAAKKAKSIIDSIANPHVPEAGET
YNGKVVKTTSFGAFVNLTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVIVQGVD
DRGKISLAIPGFEDQENNARPSRGDRDDRRGGRGRGDRDDRRGGRGRRSDRDDRDFDDRD
DRPRRRRSDDFEDDYDDRPRRRRSDDRDFDRDDRDDDRPRRRRSADRDFDDRDDRDARDS
RDDDRPRRRRSADRDDRGDRDDRRGGFRGGRGRGSDRNPRYATDDNYDDYRADREERTER
PRRRVRRDFDPFED
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atggagggtcccgaaatcaaggccgttgaggccgtgatcgacaatggatcgtttggcaag
cgcacgctgcgcttcgagaccggccgcctcgcccagcaggccgatggcgctgtggccgcc
tacctcgacgacgattccatgattctgtccaccaccaccgccggttccagcccgaaggag
aactacgacttcttcccgctgaccgtcgatgttgaagagaagatgtacgctgccggcaag
attccgggctcgttcttccgccgtgaaggccgcccgagctccgaggccatcctcgcctgc
cgcatcatcgaccgcccgctgcgcccgctgttcccgcacaccctgcgcaacgaagtgcag
gtcgtcgagaccgtgctcgccgtgaaccctgatgacgcttacgatgtcatcgccctgaac
gccgcttccgcctccaccatgatctccggcctgccgttcgaaggcccggtctccggtgtg
cgtctggcgctgatcgacggccagtgggtcgccttcccgcgttggagcgagcgtgagcgc
gccgtgttcgagatcgtggtcgccggccgcgtgatcgagaacggtgatgttgccatcgcc
atgatcgaggccggtgccggcaagaacgcctggcacctcatctatgacgagggtcagacc
aagcccgatgaggaagtcgttgccggtggtcttgaggccgccaagccgttcatcaaggtg
atctgcgaggctcaggacgagctcaagaagatcgccgccaaggagaccaaggaattccag
ctcttcccggagtacaccgacgaactgtacgcccgcatcgacgagatcgcccatcaggat
ctgaacgaggccctctccatcgccgagaagctgccgcgccaggaccgcatccacgagatc
aaggagcacgtgcgcgaggtgctcgcggacgagttcaccgatatggacgacgccgagaag
gacaaggagctgggcaacgccttcaaggagctgcagcgccagatcgtgcgccgccgcatc
ctgaccgaggattatcgcatcgacggccgtggcctgcgcgacatccgcaccctgtccgcc
gaggtggacattgtgcctcgcgtgcacggttccgccctgttccagcgtggcgagacccag
attctgggcgtcaccaccctgaacatgctcaagatggagcagcagatcgacgcgctgtcc
ggtccgcagtccaagcgctacatgcacaactacgagatgccgccgtactccactggtgag
accggccgcgtcggctccccgaagcgccgcgaaatcggtcacggcgccctcgccgagaag
gctctcgtgccggtgctgccgagccgtgaagagttcccctacgccatccgccaggtctcc
gaggccatcggttccaacggttccacttcgatgggttccgtgtgcgcctccacgctgagc
cttttggctgccggcgtgccgctgaaggccccggttgccggcatcgccatgggcctcgtg
tccggcgacgttgatggcaagcacatcttcaagaccctcaccgatatcctgggtgccgag
gatgccttcggcgacatggacttcaaggtggccggtacttccgagttcatcactgccctg
cagctcgacaccaagctcgacggcatccccgccgacatcctggccgccgctttgcagcag
gccaaggaagcccgcgccacgattctcgaggtcatcaacgagtgcatcgacggcccggct
gagatgagcgagttcgctccgcgcatcatcaccaccaccgttccggtcgagaagatcggc
gaggtcatcggcccgaagggcaagatgatcaaccagattcaggaagataccggcgctgaa
attgccatcgaggatgacggtaccgtcttcatctcctccgagggtggcgaggccgctaag
aaggccaagtccatcatcgattccatcgccaacccgcacgtgcccgaggccggcgaaacc
tacaatggcaaggtcgtcaagaccacgtcgttcggcgctttcgtgaacctcacccccggc
actgacggcctgctgcacatctcccagatccgcaacctggccaacggcgagcgtattgac
gccgtcgaagacgtgctcaaggaaggcgacaccgttgaggtgatcgttcagggtgtcgat
gatcgtggcaagatctccctggccatccctggtttcgaggatcaggagaacaacgcccgc
ccgagccgtggcgatcgcgatgaccgccgtggtggccgtggccgtggtgaccgtgacgat
cgccgtggcggccgtggccgtcgctccgatcgcgatgaccgtgacttcgacgatcgtgac
gaccgtccgcgtcgccgtcgctccgatgacttcgaggacgattacgacgaccgtccgcgt
cgccgtcgctccgatgaccgtgacttcgatcgcgatgatcgcgatgatgatcgtccgcgt
cgccgtcgttctgccgaccgtgacttcgacgatcgcgatgaccgtgatgctcgcgactcc
cgtgatgatgatcgtccgcgtcgccgtcgttctgccgatcgcgatgaccgtggcgatcgt
gatgaccgccgtggcggtttccgtggcggccgtggccgtggctcggaccgcaacccgcgc
tacgccaccgacgacaactacgacgactaccgcgccgaccgcgaagagcgcactgagcgc
ccgcgtcgccgcgtccgtcgcgactttgatccgttcgaggactaa
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