Brevibacterium linens BS258: A2T55_08440
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Entry
A2T55_08440 CDS
T04319
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bly
Brevibacterium linens BS258
Pathway
bly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A2T55_08440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bly03019
]
A2T55_08440
03009 Ribosome biogenesis [BR:
bly03009
]
A2T55_08440
Enzymes [BR:
bly01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
A2T55_08440
Messenger RNA biogenesis [BR:
bly03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A2T55_08440
Ribosome biogenesis [BR:
bly03009
]
Prokaryotic type
rRNA processing factors
A2T55_08440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DUF2226
Motif
Other DBs
NCBI-ProteinID:
AMT95412
UniProt:
A0A144MT72
LinkDB
All DBs
Position
1899951..1902929
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AA seq
992 aa
AA seq
DB search
MNDTDGTESTDPTEGILADLANLQQSANATNAEHEDVDDSVRARLDDIAEAAESLRIGDA
DDNDDEEDEPAPRRGGPKSARDAVANRGLVFEEFVRGDSDDDGDDDDSDAGDDADSDDSD
DESTAAQAAPSFDPRNPFAAPAPAASAPEPRAAPAAPYDGGLIFQVPKAELAEVVKVEDE
SDDWDDSDDTDDDTSSSQENRHNDSDEDENSNGPRRRRGGRGRRSRNRDDSHDDSSDSAD
DAKDSEDDSSDSADSNDSKSSKRGSRSNNRGSKQNSDSDNEDSHSKSDHKDSDHKDSDDS
DDGDDDSDSGSRRRRRRRSRTRSTDRDEVTSLKGSTRLEAKRQRRKEGREAGRRRPIITE
AEFLARRESVERTMLVRESGDQTQLVVVEDGIAVEHYLKENRQQSSLIGNVYLGKVQNVL
PSMEAAFIDIGKGRNAVLYAGEVNWDALGMDGKARRIETALSPGDAVLVQVTKDPIGHKG
ARLTSQISLPGRFLVYVPGNSMTGISRKLPDNERARLKKLLKQLVGDSNGVIVRTAAEGA
TDTDLSRDVERLAKRWETIEKKSKSTKVLAPQLLYSEPDMIVRIIRDVFNEDFNSLVIDG
DGAWNTIHEYVESVAPDLLDRVHSYNEDEDIFDHYRIEEQIQKALQRTVNLPSGGSLVID
RTEAMTVVDVNTGKFTGSGGNLEETVTRNNLEAAEEVIRQIRLRDIGGIIVVDFIDMVLE
SNRDLVVRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRIGTGLAESLVSAGEDLTGRGLL
LPGSEEDGSKAHRGNRSSNHDNRRDRKRRGDSGSKSKHNESETTEENVSSDASRSAVAAI
AKATLKKDDAEPTESKSDAQTDSADSANNDEGGKPRSRSRNGRRRSRSNRNDESQTETSD
EKSSRDEQSSAAEEKPAAEQKPAAEQKPAAEEKPAADEPKDLPLMIGADSETKVAAAAPV
KRAPAKKSEPAKKAPAPKQEQLPTSFVIIGED
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atgaacgataccgacggtacagagtcgacagatccgaccgaaggcattctcgcggacctc
gcgaatctgcagcagtcggccaacgccacgaatgccgaacacgaggatgtcgacgacagc
gtgcgcgcacggcttgacgacatcgccgaggcggccgaatctctgcgcatcggcgacgcc
gatgacaatgacgacgaagaggacgaacccgcccctcgccgaggcggcccgaaatcagca
cgcgacgccgtggccaatcggggactcgtcttcgaagagttcgtccgcggagactcggat
gacgacggcgatgacgatgattccgatgccggcgacgacgctgattccgacgactccgat
gacgagtcgacggctgcgcaggctgcgccgagcttcgacccgcgcaacccctttgccgcg
cccgctcctgccgcttccgcacccgaaccccgcgcggcccctgcagcgccctacgacggc
ggcctgatcttccaggtgccgaaggccgaactcgccgaggtcgtcaaggtcgaggacgag
tccgacgactgggacgattccgacgacaccgatgacgacacctcgtcctcgcaggagaac
cgccacaacgacagtgacgaggacgagaactcgaacggtccgcgtcgccggcggggcggc
cgcggccgtcgctcgcgcaatcgcgacgactcccacgacgattcctcggactccgctgac
gatgcgaaggactccgaggacgactcctcggactctgccgacagcaacgactcgaagtcc
tcgaagcggggatcgcgatcgaacaatcgcggttcgaagcagaactccgattcggacaat
gaggactcacactcgaagtcggaccacaaggactccgaccacaaggactccgacgattcg
gacgatggtgacgacgactccgacagcggctcacgccgtcgccgccgtcgccggtcccgc
acccgcagcaccgaccgtgacgaggtcacctcgctcaagggttcgactcgcctcgaagcc
aagcgccagcgtcgcaaggaaggccgcgaagccggacgtcgtcgccccatcatcaccgag
gccgagttcctcgcccggcgggagtccgtcgagcgcaccatgctggtgcgtgagagcggc
gaccagacacagctcgtcgtcgtcgaagacggaatcgcggtcgagcactacctcaaggag
aaccgtcagcagtcctcgctcatcggcaacgtctacctgggcaaggtccagaacgtgctg
ccgagcatggaagcggcattcatcgacatcggcaagggccgcaatgccgtgctctacgcc
ggtgaagtcaactgggatgcactcggcatggacggcaaggcgcgccgcatcgaaaccgcg
ctgagccccggggatgccgttctcgtgcaggtgacgaaggacccgatcgggcacaagggc
gcccgcctgaccagtcagatctctctgcccggacgattcctcgtctacgtgcccggcaac
tcgatgaccggtatctcgcggaagctgcccgacaatgaacgagcacgcctgaagaagctg
ctcaagcagcttgtcggcgactcgaacggtgtcatcgtgcgcaccgccgccgagggtgcc
accgacaccgacctctcgcgtgacgtcgaacgtcttgccaagcggtgggagacgatcgag
aagaagtccaagtcgacgaaggtgctggctccgcagcttctctacagcgagccggacatg
atcgtgcgcatcatccgcgatgtcttcaacgaggacttcaactcgctcgtcatcgacggc
gacggtgcatggaacacgatccacgagtatgtcgaatccgttgccccggacctgctcgac
cgtgtgcacagctacaacgaggacgaggacatcttcgatcactaccggatcgaagagcag
attcagaaggcgctccagcgtacggtgaatctgccctcgggcggttcgctcgtcatcgac
cgcaccgaagcgatgacggtcgtcgacgtcaacaccggcaagttcaccggctccggaggc
aatctcgaggagacggtgacccgcaacaacctcgaagccgccgaggaggtcatccgccag
atccgtctgcgtgacatcggcggaatcatcgtcgtcgacttcatcgacatggtgctcgaa
tccaaccgcgatctcgtggtgcgccgcctcgtcgaatgtctgggccgtgaccggacgaag
catcaggtcgccgaggtgacttcactgggactcgtgcagatgacgcgcaagcgcatcggc
accggactcgccgaatctctcgtcagcgctggtgaggacctcaccggccggggactgctg
ctgcccggctcggaagaagacggctcgaaggcccaccgcggcaaccggtcgtcgaaccac
gacaaccgccgtgaccgcaagcgtcggggtgactccggctcgaagtccaagcacaacgag
tccgagacgacagaggagaacgtgtcctcggacgcgtcacggtcggccgtcgccgcgatc
gcgaaggccactctgaagaaggacgacgcggaaccgaccgagtcgaagtccgacgctcag
actgatagtgcggactctgcgaacaacgacgaaggcggaaagccccgatcgcgttcacgc
aacggtcggcgccgttctcgttcgaaccgcaacgacgaatcgcagacggagacgtcagac
gagaagtcgagccgggacgagcagtcgtcggctgcggaagagaagcctgcggccgaacag
aagcccgcagccgagcagaagcctgcagcggaagagaagccggctgccgacgagccgaag
gacctgccattgatgatcggcgcggacagcgagacgaaggtcgccgctgccgcacccgtc
aagcgcgccccggcgaagaagagcgaaccggcgaagaaggctcctgcacccaagcaggaa
cagctgccgacttcgttcgtcatcatcggcgaggactga
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