Bifidobacterium longum subsp. longum GT15: BLGT_02915
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Entry
BLGT_02915 CDS
T03452
Name
(GenBank) ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
blz
Bifidobacterium longum subsp. longum GT15
Pathway
blz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
blz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BLGT_02915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
blz03019
]
BLGT_02915
Messenger RNA biogenesis [BR:
blz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BLGT_02915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_6
DUF459
Motif
Other DBs
NCBI-ProteinID:
AIW43414
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All DBs
Position
706569..708419
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AA seq
616 aa
AA seq
DB search
MAQEQKKTSKNTNSRRRGSARGRNANGSNSRTPSRKINATRQATAPQQDAVLIAPPKYRK
GSMRITPLGGLGEIGRNMNVIEYNGHLLLIDCGVLFPEEEQPGVDLILPDFSYIKNRLDK
VDALVLTHGHEDHIGGVPYLLKLRPDIPLIGSKLTLAFVDAKCKEHHQNPTKVEVAGREK
LKVGPFDLEFVNVTHSIPDALAVYVKTPAGSLIDTGDIKLDQLPLDHRITDLVEFGKIGE
KGVDLLMMDSTNAEVPGFVKPETSIGPALDQAFAQATRKIIVASFSSHVHRVQQVVDAAH
KYGRKVVFVGRSMVRNMSIAADLGYLHIPEGTVVDLKQANDIQDDKLVFMCTGSQGEPMA
ALGRIADGNHRDIHINEFDTVILASSLIPGNEHGVYKVINKLVQLGAKVVNRDNAAVHVS
GHCNEGELLYMYNIVKPKCAMPIHGENRHLVANGLIAVKTGVDPQNVVLAEDGDVVDLYH
GRAAVVGSVPCGYVYVDGDSVGELTDDELEKRRILGTEGFVSAFVVVDTDNHEVVTGPKI
YLNAVAEDESEFDKVRHQIVEQLNDQMMQGTRDTYKLQQTMRRTLGSWVARQLHRKPMIV
PVVADIAQDVETVETK
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atggcacaagaacaaaagaaaacaagcaagaacacgaattctcgccgtcgcggttccgcg
cgcggccgcaacgccaacggatccaacagccgtacgccgtcccgtaagatcaacgccacc
cggcaggccaccgcaccccagcaggatgccgtgctgatcgccccgccgaagtaccgcaag
ggctccatgcgcatcacgccgctcggcggcttgggtgaaatcggccgcaacatgaacgtg
atcgaatacaacggtcacctgctgctcatcgactgcggcgtgctcttccccgaggaggag
cagccgggcgtggatctcatcctgcccgatttcagctacatcaagaaccgtctcgacaag
gtcgacgccctggtgctcacccacggccacgaggaccacatcggcggcgtgccctacctg
ctcaagctgcgcccggacatcccgctgatcggctccaagctgaccctcgccttcgtggac
gccaagtgcaaggaacaccaccagaaccccaccaaggttgaggttgccggccgtgagaag
ctcaaggtgggtcccttcgacctcgaattcgtcaacgtcacccactccatcccggacgcc
ctggccgtctatgtcaagaccccggccggctccctgatcgacacgggcgatatcaagctc
gaccagctgccgctcgaccaccgcatcaccgacctcgtcgaattcggcaagatcggcgaa
aagggcgtggacctgctgatgatggactccaccaacgccgaggtgcccggcttcgtcaag
cccgagacctccatcggcccggcccttgaccaagcgttcgcccaggccacccgcaaaatc
atcgtcgccagcttctcctcccacgtgcaccgtgtgcagcaggtggtggacgccgcccac
aagtacggccgcaaggtcgtgttcgtcggccgttcgatggtgcgcaacatgtccatcgcc
gccgacctcggctacctgcacatccccgaaggcaccgtcgtggacctgaagcaggccaac
gacattcaggacgacaagctcgtcttcatgtgcaccggctcccagggcgaaccgatggcc
gcactcggccgcatcgccgacggcaaccaccgcgatatccacatcaacgagttcgacacc
gtgattctcgccagctccctgattccaggcaatgagcacggcgtctacaaggtgatcaac
aagctcgtgcagctcggcgccaaggtcgtcaaccgcgacaacgccgccgtgcacgtgtcc
ggccactgcaacgagggcgagctgctgtacatgtacaacatcgtcaagcccaagtgcgcc
atgccgatccacggcgaaaaccgccatctggtggccaacggcctgatcgccgtcaagacc
ggcgtggacccgcagaacgtggttttggccgaagacggcgatgtggtcgacctgtaccac
ggcagggccgcggtcgtcggctccgtgccgtgtggttacgtgtacgtcgatggcgattcc
gtcggcgagctgaccgatgacgagctggaaaagcgccgcattctcggcaccgagggcttc
gtctccgcgttcgtggtggtcgacaccgacaatcacgaggtcgtcaccggcccgaagatc
tacctgaatgccgtggccgaggacgaaagcgagttcgacaaggttcgtcaccagatcgtc
gaacagctcaacgaccagatgatgcagggcacgcgcgacacctacaagctgcagcagacc
atgcgccgcacgctcggcagctgggttgcgcgccagctgcaccgcaagccgatgatcgtg
cccgtcgtggccgacatcgcccaggacgtcgaaaccgtagaaaccaagtag
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