Bifidobacterium longum subsp. longum GT15: BLGT_04275
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Entry
BLGT_04275 CDS
T03452
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
blz
Bifidobacterium longum subsp. longum GT15
Brite
KEGG Orthology (KO) [BR:
blz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
blz03016
]
BLGT_04275
Enzymes [BR:
blz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
BLGT_04275
Transfer RNA biogenesis [BR:
blz03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
BLGT_04275
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Motif
Other DBs
NCBI-ProteinID:
AIW43622
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All DBs
Position
1016913..1018214
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AA seq
433 aa
AA seq
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MSDVRDAEPRLLKEPRGGVPDVTSTLDGYHRVCDAMAEATGSLAADAERASGFRYGHEDW
LIQFKREGAGIALLDPVALTRAGADWNEFNDAVGDATWILHDSLMDLPGFAEIGLKPKAL
FDTEIAARLLGLHRFGLAAVTEHYLGITLAKEHSAADWSYRPLPRDWRNYAALDVEVLIE
LETMMRRDLKAAGKDEWAAEEFSHALVAGLAPRKPHPIPWLRISRITQLSRDPRGLAIAK
SLWEERDRLARQYDIAPSLLLADSSIIEAATNKPHNAAQFRALRSLNERVRIHTGTEQDK
MFERYAPIQRAVKSKVWKQAIDRAIALKPTQWPTMPAPEQDENGVVNAPRSMRLWQQRHP
ERYDRLQRVRRVINRIAEDTRTPAEMIIKPQILRNLCWVEDPVEVDVETFLIEQGARNWQ
VKLIAPSVSGVIM
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
ttgagtgacgtccgtgacgccgaaccccgactgctgaaagagcctcgcgggggagtaccc
gatgtcacttcgacgctggacggctatcatcgtgtctgcgatgcgatggccgaggcgacg
ggctcgctggccgccgacgccgaacgggcgtccggcttccgctatggacacgaggattgg
ctgattcagttcaaacgtgagggtgcaggcatcgccttgcttgatcccgtcgccctgacc
cgggccggagctgattggaatgaattcaatgacgccgtgggcgacgccacgtggattctg
catgattctctgatggacttgcccggattcgccgaaatcgggctcaaacccaaagccctg
ttcgacacggaaatagcggcgcgattgctcggcctgcaccgctttggtctggccgccgtc
accgaacactacctcggcatcacgctagccaaagagcattccgccgccgattggtcctac
cgtccgctgccgcgcgactggcgcaactatgcggcgctcgacgtggaggtgcttatcgaa
cttgaaaccatgatgcgtcgtgacctgaaagccgcaggcaaggacgagtgggccgctgaa
gagttttctcacgctttggttgcgggccttgccccgcgcaaaccgcatccgattccttgg
ctgcgtatctcgcgcatcacccagctgagtcgtgatccaaggggcttggccatcgccaaa
tccctatgggaggagcgcgaccgactcgcccggcaatacgatattgcgcccagcctgtta
ttggccgattcatcaatcatcgaggcggcgaccaacaagccgcacaatgctgcccaattc
cgcgcgctccgatccctgaacgagcgtgtgcgcatccataccggcaccgagcaggacaaa
atgttcgagcggtacgcgccgattcagcgtgcggtcaaatcgaaggtctggaagcaggcc
atcgatcgagccatagccctgaagcccacccaatggcctaccatgcccgcccccgaacag
gacgaaaacggtgtggtgaacgcgccccgatccatgcggctgtggcaacagcgccatccg
gagcgttatgaccgtctgcaacgggtgcggcgtgtgatcaaccgcatcgccgaagacacc
cgcacgccggccgagatgatcatcaagccacagatcctacgcaacctgtgctgggtggaa
gacccggtggaagtggacgtcgagacgttcctgatcgagcagggcgcaaggaactggcaa
gtgaaactcattgcaccgtccgtaagtggcgttatcatgtag
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