Pseudoblastomonas marina: T8S45_01090
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Entry
T8S45_01090 CDS
T09636
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bmaa
Pseudoblastomonas marina
Brite
KEGG Orthology (KO) [BR:
bmaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bmaa03016
]
T8S45_01090
Enzymes [BR:
bmaa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
T8S45_01090
Transfer RNA biogenesis [BR:
bmaa03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
T8S45_01090
Prokaryotic type
tRNA splicing ligases
T8S45_01090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WPZ04155
LinkDB
All DBs
Position
233844..235070
Genome browser
AA seq
408 aa
AA seq
DB search
MTQTGYEFQQVDGGSPIKMWTRGVPVDDKAREQLAKAARMPFIFKHVAAMPDVHVGIGAT
VGSVIPTKGAVIPAAVGVDIGCGMMAARTSLHASDLPDNLEGIRSAIERAVPHGRSSGRG
GRDKGAWGDPPPETIEAWATLVHRFDRIVAKYPKLERSNHLVHLGTLGTGNHFIELCLDE
EQRVWVMLHSGSRGVGNAIGRFFIELAKEDMRKWHINLPDEDLAYFPEGTDHFDDYVEAV
EWAQDFARLNRQVMMFHTIAALRGQIPKPFTAECEAVNCHHNYVTRENHFGENVLVTRKG
AVRAAKGTLGIIPGSMGAKSFIVRGLGNADSFDSCSHGAGRIMSRTQAKKEVSLEEHIAD
TAGVECRKDEGVIDETPKAYKPIEKVMAAQADLVEIVHTLKQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgacccagacgggctacgaatttcagcaggtggatggcggatcgccgatcaagatgtgg
acgcggggcgttcccgtcgatgacaaggcgcgcgagcaactagccaaggcggcgcggatg
ccgtttatcttcaagcatgtcgccgcgatgcccgacgtccatgtcgggatcggcgcgacg
gttggttcggtcattcccacgaagggcgcggtaatcccggcggcggtcggggtcgatatt
ggctgcggcatgatggccgcgcggacctcgctccatgcgagcgacctgcccgataacctc
gaaggcatccgttccgcgatcgagagggccgtgccccatggccggtcttcgggccggggt
gggcgcgacaagggtgcgtggggcgatcccccgcccgaaacgatcgaagcctgggccacg
ctagtccaccgtttcgatcggatcgtggcgaagtatccgaagctcgaacggtcgaaccat
ctcgtccatctcgggacgctcgggacgggcaaccacttcatcgaactgtgcctcgacgag
gagcagcgggtgtgggtgatgctccattcgggcagccgaggcgtgggcaacgcgatcggg
cggttcttcatcgaactggccaaggaagacatgcgcaaatggcacatcaacctgcccgac
gaggacctcgcctatttccccgaggggaccgatcatttcgatgattacgtcgaagcggtc
gaatgggcgcaggatttcgcacggctcaaccggcaggtgatgatgttccacacgatcgcg
gcgttgcggggacagatccccaagccttttacggccgaatgcgaagcggtgaactgccat
cacaactacgttacgcgggaaaaccacttcggggaaaacgtgcttgttacccgcaagggg
gcggtgcgcgccgcgaagggcacgctcggcatcattcccggatcgatgggcgcgaagagc
ttcatcgtgcgcggccttggcaacgcggatagcttcgatagctgctctcacggggccggc
cggatcatgagccggacccaggcgaagaaggaggtgtcgctcgaagagcacatcgccgac
acggccggggtcgagtgccgaaaggacgaaggcgtgatcgacgagacgcccaaagcgtac
aagccgatcgaaaaggtcatggccgcgcaggccgacctcgtcgagatcgtccatacgctt
aagcaagtggtgtgcgtgaagggctaa
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