Pseudoblastomonas marina: T8S45_04145
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Entry
T8S45_04145 CDS
T09636
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bmaa
Pseudoblastomonas marina
Pathway
bmaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bmaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
T8S45_04145 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bmaa03019
]
T8S45_04145 (rnr)
03016 Transfer RNA biogenesis [BR:
bmaa03016
]
T8S45_04145 (rnr)
Enzymes [BR:
bmaa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
T8S45_04145 (rnr)
Messenger RNA biogenesis [BR:
bmaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
T8S45_04145 (rnr)
Transfer RNA biogenesis [BR:
bmaa03016
]
Prokaryotic type
tRNA degradation factors
T8S45_04145 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
FaeA
RNase_II_C_S1
WHD_RNase_R
Motif
Other DBs
NCBI-ProteinID:
WPZ04740
LinkDB
All DBs
Position
complement(850186..852528)
Genome browser
AA seq
780 aa
AA seq
DB search
MTKPKKNRARHRNPGLPSKDEILKFIKTSDNPAGKREIAKAFGLKGQERVQLKALLRDMA
DEGMIDGNKSAFHRMGGVPKVTVLKVVEIEDGEPIAVPENWAPDTGTPAPKIRLIEKKDK
HAALRTGDRVLARTEEAGKGHRGFVMKKLPQRLDQMMGVVDIDKSGQGWLAPVDKSVRNS
SKIADLGGAEDGQLVYAETVGRGQRASVKVTEVIGDPLAPKSFSLIAIAKHGIPHIFPDE
VIAEAESAAKLPLSEDHREDLRHLPIVAIDPADARDHDDAIWAAPNDEGGFDALVAIADV
SYYVRPGGKLDREARKRGNSVYFPDRVVPMLPEVLSADVCSLRQGEDRAAMACHMKIDAE
GRIKDWRFTRAIVRIDEVIPYEDAQRRIDEGAAGENLNNLWACWKALHAAREARDPLNLE
LPERKVQLDDQGRITEIAVRERLDAHRVVEDFMIAANVAAAKALEAKSAPVVYRVHEQPS
REKIVALKDYIESIGGKLALGQVITPSLFNRMLKDVADEQEKALLMEAVLRSQTQAYYGP
ANAGHFGLALGSYAHFTSPIRRYADLLVHRALVDAYKLEQPKPKGKLPDNSGLSDQDRSD
LGKISDAISKTERRAMEAERDTIDRYVAAWLAGRVGQTFETRITGVQSFGFFATILEFGG
DGLVPVSTLGNDYFQYDEKAQSLVGERTGESYTVGDRLELKLAEANPITGALKFEVPGQE
GRIEKRGNRAHGKKKREGGKGHGKGQGKHKGASKDKPKHAQGKRGRPANIRHQGRSKKKG
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaaccgaaaaagaacagggcgcgccaccgcaatccggggctgccttcgaaggac
gagatcctcaaattcatcaagaccagcgataatcccgccggcaagcgcgagatcgcgaag
gcgttcggcctcaaggggcaggagcgcgtgcaattgaaggcgctgctgcgcgacatggcc
gatgaaggcatgatcgacggcaacaagagcgcgttccaccgcatgggcggcgtgcccaag
gtcaccgtactcaaggtggtcgagatcgaggacggcgaaccgatcgccgtgccggagaac
tgggcgccagacaccggcacccccgcgccgaaaatccgcctgatcgagaagaaggacaaa
cacgccgccttgcgcaccggggaccgcgtgctcgcgcggaccgaggaggccgggaagggc
catcgcggcttcgtgatgaagaagctgccgcagcggctcgaccagatgatgggcgtggtc
gatatcgacaagagcggccagggctggctcgccccggtcgacaagagcgtgcgcaattcc
tccaagatcgccgacctgggcggcgcggaagacggccagctcgtctatgccgagacggtc
gggcgcggacagcgtgcgtcggtcaaggtcaccgaggtgatcggcgatccgctcgcgccc
aagagcttcagcctgatcgcgatcgccaagcacggcatcccgcatatcttccccgacgag
gtgatcgccgaagcggaaagcgcggccaaactgccgctcagcgaggaccaccgcgaagac
ctgcgccacctgccgatcgtcgcgatcgatcccgccgacgcgcgcgaccacgacgatgcg
atctgggccgcgcccaacgacgagggcgggttcgacgcgctcgtcgcgatcgccgacgta
tcctattacgtgcgccccggcggcaagctcgatcgcgaggcgcgcaagcgcggcaattcg
gtctatttccccgaccgcgtcgtgccgatgctgcccgaagtgttgagcgcagacgtctgc
tcgctccgccagggcgaggaccgcgcggcgatggcctgccacatgaagatcgacgccgaa
gggcggatcaaggactggcgcttcacccgcgcgatcgtgcggatcgacgaggtcatcccc
tacgaggacgcgcagcgccggatcgacgagggcgcggcgggcgaaaacctcaacaacctg
tgggcctgctggaaggctctccacgccgcgcgcgaagcgcgcgacccgctcaacctcgag
ctgcccgagcgcaaggtccagctcgacgaccagggccgcatcaccgagatcgccgtgcgc
gaacggctcgatgcccaccgcgtggtcgaggacttcatgatcgccgccaacgtcgccgca
gcgaaggctctcgaagccaagtctgcgccggtggtctaccgcgtccacgaacagccgagc
cgcgaaaagatcgtcgcgctcaaggactatatcgagagcatcggcggcaagctcgcgctg
gggcaggtgatcaccccttcgctgttcaaccgcatgctcaaggacgtcgccgacgagcag
gagaaggcgctgctgatggaagcggtgctgcggagccagacgcaggcctattatgggccc
gccaatgccggccatttcggcctcgcgctgggcagttacgcgcatttcacctcgccgatc
cgccgctatgccgacctcctggtccaccgcgcgctggttgatgcctacaagctcgaacag
ccgaaacccaagggcaagctgcccgacaattcgggcttgtcggaccaggatcgcagcgac
ctcggcaagatttccgatgcgatcagcaagaccgagcgccgtgcgatggaggccgagcgc
gacacgatcgaccgctacgtcgccgcctggctcgcgggtcgcgtggggcagaccttcgaa
acgcggatcaccggggtgcagagcttcggcttcttcgccacgatcctcgaattcggcggc
gacgggctggtcccggtctcgacgctcggcaacgactatttccagtacgacgagaaggcg
cagtcgctggtcggcgagcggaccggcgagagctacaccgtcggcgaccggctcgaactc
aagctggccgaggcgaacccgatcaccggtgcgctcaaattcgaggtgccggggcaggaa
ggccgtatcgagaaacgcggcaatcgtgcgcacggcaagaagaagcgcgagggcggcaag
gggcacgggaaaggccagggcaagcacaagggcgcgtcgaaggacaagcccaagcatgcc
cagggcaagcgcggtcgtccggccaatattcgccaccaggggcggagcaagaagaaggga
tag
DBGET
integrated database retrieval system
