Pseudoblastomonas marina: T8S45_04960
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Entry
T8S45_04960 CDS
T09636
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bmaa
Pseudoblastomonas marina
Pathway
bmaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bmaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
T8S45_04960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bmaa03019
]
T8S45_04960
Enzymes [BR:
bmaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
T8S45_04960
Messenger RNA biogenesis [BR:
bmaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
T8S45_04960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
WPZ04891
LinkDB
All DBs
Position
complement(1024051..1025433)
Genome browser
AA seq
460 aa
AA seq
DB search
MTTTFDQLGLSQPVLQALDLKGYSEPTPIQAQAIPPVLEGRDLLGIAQTGTGKTAAFMLP
SIDRLREADNQTPFKSCRMLVLAPTRELAGQIAESAKDYGALAGLKVHSIVGGTSVNKDR
NKLHRGTDILVATPGRLLDLIDQKAFNLSGVEILVLDEADQMLDLGFIHALRKISQLVPQ
DRQTLFFSATMPTAIKELVGKYCNNPVTVSVTPAATTAERIDQYLFMVQQDEKQTLLEMI
LSERHPVPGKFERVLIFARTKHGCDRMVKKLSQCGIPSNAIHGNKSQPQRERALGEFKSA
KTPILIATDVAARGIDIPGVSHVINYELPNVPEQYVHRIGRTARAGADGIAIAMCAEDER
AYLKDIRKTTDAEFERLDLPENFRAVVEGVGPTKRAPPGQRAPRANVKPRQGGGQRKPGG
GRGGKPQGQGGGQRSGGQRSGGQGGGGNRRRNRRGGRNNT
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgaccactacattcgaccaactcgggctctcgcagcccgtcctccaggcgctcgatctc
aagggctattccgaacccaccccgatccaggcgcaggcgatcccgcccgtgctcgaaggg
cgcgacctgctgggcatcgcccagaccggcaccggcaagaccgccgcgttcatgctcccg
agcatcgaccggctgcgcgaggcggacaaccagacgccgttcaagtcctgccgcatgctg
gtgctcgcgccgacgcgtgaacttgccgggcagatcgccgaatccgccaaggattacggc
gcgctcgccgggctcaaggtgcacagcatcgtcggcggcacctcggtcaacaaggatcgc
aacaagctgcatcgcggcaccgatatcctcgtcgccacgccgggccgcctgctcgacctg
atcgaccagaaggccttcaacctttctggcgtggaaatcctcgtcctcgacgaggccgac
cagatgctcgacctcggcttcatccacgcgcttcgcaagatcagccagctggttccgcag
gaccgccagaccctgttcttcagcgccaccatgccgaccgcgatcaaggaattggtcggc
aaatattgcaacaaccccgtcaccgtgtcggttacgcctgcggccaccaccgcggaacgc
atcgaccagtacctcttcatggtccaacaggacgagaagcagacgctgctcgagatgatc
ctgtccgagcgacatccggtgcccggcaagttcgagcgcgtgctgatctttgcgcgtacc
aagcatggctgcgaccggatggtgaagaagctctctcagtgcggcatcccgtccaatgcg
atccacggcaacaagagccagccgcagcgcgaacgtgcgctgggcgagttcaagagtgcc
aagacgccgatcctgatcgcgaccgatgtcgccgcacgcgggatcgatatcccgggcgtc
agccacgtgatcaattacgagctgcccaacgtgcccgaacaatatgtccaccgcatcggc
cgcaccgcgcgcgccggggcggacgggatcgcgatcgcgatgtgcgccgaagacgaacgc
gcctatctgaaggacatccgcaagacgaccgatgccgaattcgaacggctcgacttgccg
gagaatttccgcgccgtggtcgaaggcgtcggcccgaccaagcgcgcccctccgggccag
cgcgccccgcgtgcgaacgtcaagccgcgccagggcggcggacagcgcaagcccggcggc
ggtcgtggcggcaagccgcagggccagggcggcggacagcgttcgggtggacagcgctcg
ggaggacagggcggaggcggaaaccgtcgccgcaaccgtcgcggcgggcgcaacaatact
tga
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