Pseudoblastomonas marina: T8S45_05355
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Entry
T8S45_05355 CDS
T09636
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bmaa
Pseudoblastomonas marina
Pathway
bmaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bmaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
T8S45_05355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bmaa03019
]
T8S45_05355
03009 Ribosome biogenesis [BR:
bmaa03009
]
T8S45_05355
Enzymes [BR:
bmaa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
T8S45_05355
Messenger RNA biogenesis [BR:
bmaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
T8S45_05355
Ribosome biogenesis [BR:
bmaa03009
]
Prokaryotic type
rRNA processing factors
T8S45_05355
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
CHP02642
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
WPZ04969
LinkDB
All DBs
Position
1108197..1110926
Genome browser
AA seq
909 aa
AA seq
DB search
MPTRMLIDARHPEETRVAVLKGNRIEEFDFESSDHKQIKGNIYLAKVTRVEPSLQAAFVD
FGGNRHGFLAFSEIHPDYYQIPAEDRAALIAEEQEAAEEEARLRAEEEERGEMPGDEYDA
DDETGESLVEEIAEDGLEEIDGSEKDKVATLEEGEAVEDHDDDEDEDDDSDEDDDSSNGR
RSRGRKGGRGKGGKTGKGRRQGRARAKEVDEVRERRRALRRRYKIQDVIQRRQVLLVQVV
KEERGNKGAALTTYLSLAGRYTVLMPNSSSGGGISRKINNAGDRKRLKKVVGDLSLPKTM
GLIVRTAGLSRTKTEIKRDFDYLARLWDEIREKTLGSAAPALIHSDSDLIKRAIRDVYNR
EIEEVLVEGEEGYKSAKAFMKLLMPSHARRVKAYSDPVPLFQRYGAEDQLRAMYDPQVQL
KSGGYLIINPTEALVSIDINSGRSTKEHGIEATALHTNLEAAKEIARQLRLRDMAGLVVI
DFIDMDYNSNVRKVERAMKDALKNDRARIQVGRISGFGLMEMSRQRLRTGVLEATTRECP
HCDGTGLVRTASSSALSALRLIEDEAAKGKGTVIKLYASQEATIYLLNDKRGDLAEIEER
YGVTVHVVPEGEDEGAKMRVESAGPKPASRPKFEPIVEDDEPEDDIIEDDFEDEDEEDDR
PKKKSRSRGGRGRNKQRGGKPDKTQDDGNDGDEGDNDNSGERGSDDDEDGEGRPKKRRRR
GRRGGRGRGRKKDTPTGEDAENLEQVSEQLDDDIAVVAGPEDEPVVAEAAAKEDKPKRAR
RKPAAKKAEKGGEEATEDAKSEEKPKRTRRKKVDDAEVAPAAEEKPKAKRAPRKTKADTE
DAPAEDAKAEEKPKRARRKPAAKKADAEPTAKKPAAPVAEARETESAAATVEDKPAKPRR
GWWQRTFGE
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atgcccacgcgtatgctaatcgatgcgcgccacccggaagaaacgcgggtcgcggtactt
aaaggcaaccggatcgaggagttcgatttcgaatcctccgatcacaagcagatcaaggga
aatatctacctcgcgaaggtgacgcgggtcgaaccgagccttcaggccgcgttcgtcgat
ttcggcggcaatcgccacggcttcctcgccttcagcgaaatccaccccgattattaccag
atcccggccgaggatcgtgccgcgctgatcgccgaggaacaggaggcggccgaagaagaa
gcccgcctgcgcgccgaagaggaagagcgcggcgaaatgccgggcgacgaatacgacgcc
gacgacgagaccggcgaaagcctggtcgaggaaatcgccgaagacggcctcgaggaaatc
gacggcagcgaaaaggacaaggtcgccaccctcgaagaaggcgaagcagtcgaagaccac
gacgacgatgaagacgaggacgacgattccgacgaggatgacgattcctcgaacggtcgc
aggtcccgcggtcgcaagggcggtcgcggcaagggtggcaagaccggcaagggtcgccgc
cagggccgtgcccgcgccaaggaagtcgacgaagtccgcgaacgtcgccgcgcgctgcgt
cgtcgctacaagatccaggacgtcatccagcgccgccaagtcctgctcgtccaggtcgtg
aaggaagaacgcggcaacaagggtgccgcgctgaccacctatctcagcctcgcgggccgt
tacaccgtgctgatgcccaacagcagcagcggcggcggcatttcgcgcaagatcaacaat
gcgggcgaccgcaagcggctgaaaaaggtcgtcggtgacctcagcctgcccaagacgatg
ggcctgatcgtccgcaccgccgggctgtcgcgcaccaagaccgagatcaagcgcgacttc
gattatctcgcccggttgtgggacgagatccgcgagaagacgttgggctcggccgcgccc
gcgctgatccattcggacagcgatttgatcaagcgcgcgatccgcgacgtctacaatcgc
gagatcgaggaagtgctggtcgagggcgaggaaggctacaaatcggccaaggcctttatg
aagctgctgatgcccagccatgcgcgccgggtgaaagcctattcggacccggtcccgctg
ttccagcgctacggcgccgaggaccagctgcgcgcgatgtacgacccgcaggtccagctc
aagtcgggcggctatctgatcatcaatccgaccgaggcgctggtctcgatcgacatcaac
tcgggccgttcgaccaaggagcacggaatcgaggcgaccgcactccacaccaaccttgag
gcggccaaggaaatcgcccgccagctgcgcctgcgcgacatggccggactggtcgtgatc
gacttcatcgacatggattacaattccaatgtccggaaggtcgaacgtgcgatgaaggac
gcgctcaagaacgatcgcgcgcggatccaggtcggtcgcatttccggcttcggcctgatg
gagatgagccgccagcgcctgcgcaccggcgtgctcgaggcgaccacccgcgaatgcccg
cattgcgacggcaccggcctcgtccgcaccgcctcaagctcggcactcagcgcgctgcgc
ctgatcgaggacgaggcggccaagggcaagggcacggtgatcaagctctatgcgagccag
gaagccacgatctacctgctcaacgacaagcgcggcgacctcgccgaaatcgaagaacgc
tatggcgtcaccgtccatgtggtgcccgagggcgaggacgaaggcgccaagatgcgggtc
gaaagcgcgggccccaagccagcctcacgaccgaaattcgagccgatcgtcgaagatgac
gagcccgaagacgacatcatcgaagacgatttcgaagacgaggacgaggaagacgatcgt
ccgaagaagaagtcgcgcagccgtggcggtcgcggccgcaacaagcaacgcggcggcaag
ccagacaagacacaggatgacggcaacgacggcgacgagggcgacaacgacaattccggc
gaacgcgggagcgacgacgatgaagacggcgaaggtcgtccgaagaagcgccgtcggcgt
gggcgtcggggcggtcgcggacgcggtcgcaagaaggatacgccgacgggtgaagacgcc
gagaacctcgagcaggtgagcgagcagctcgacgacgatatcgcggtcgtggccggtccc
gaggacgaacccgtcgtcgcagaagccgcggccaaggaagacaagccgaagcgcgcgcgt
cgcaagcccgcggccaagaaggccgaaaagggcggcgaggaagcgaccgaggacgccaag
tccgaggagaagcccaagcgcacccgtcgcaagaaggtcgacgacgccgaggtcgctccc
gcggccgaggagaagccgaaggcgaagcgcgctccgcgcaagacgaaggccgataccgaa
gatgccccggccgaggacgccaaggccgaggaaaagcccaagcgcgcgcgcaggaagccc
gcggccaagaaggccgatgccgagccgaccgcgaagaaacctgccgccccggtggccgaa
gcgcgcgagaccgaaagcgccgcagcgacggtggaagacaagcccgccaagccgcgccgc
ggctggtggcagcgcaccttcggggagtga
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