Bartonella machadoae: LNM86_07115
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Entry
LNM86_07115 CDS
T08469
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bmac
Bartonella machadoae
Pathway
bmac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bmac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LNM86_07115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bmac03019
]
LNM86_07115
Messenger RNA biogenesis [BR:
bmac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LNM86_07115
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Ortholog
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GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
RMMBL
RNase_J_C
Lactamase_B
Motif
Other DBs
NCBI-ProteinID:
UNE53451
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Position
complement(1456475..1458151)
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AA seq
558 aa
AA seq
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MVATNESEFVFLPLGGVGEIGMNLAAYGFGPENLREWLLVDMGVSFAGPELPGADLILPD
IRFLESEKHNVRGLVLTHAHEDHCGAVLDLWPKLKVPLYCTPFTAGLLESKRQSDFGFHE
ISFNIFQAGDCFQVGSFAIEAIAVNHSIPESVSLAITTSLGTVIHTGDWKIDLTPSLGAR
TDEKRFRTLGNKGVLALLCDSTNACRDGITPSEQQVQTSLSEIFSKAEGQVAIVTFASNV
GRIRSIALAAESVGRQVLVVGRSLKRSLMVAQELGYMDGLAPFVTEDDYGYIPRKEIVLI
VTGSQGEPCAALAKLSRNGMRNIALSAGDTVIYSSRSIPGNEKAILEIQNRFIDMGVKVI
TNEDALVHVSGHPRRAELVQMYDWVKPQIVVPVHGEATHLTAQATLARQAGIEIVSNIRN
GSMLRLAPEPVEIIDQVPVGRIYKDGCLIGDEDELGIRERRKLSYAGYVAVSLHVNSKHE
LLGDIGLNTFGLPENNGKGENLKDILLNVVENTFYNIPRIKQKNKELIREAIRRAVRAAV
NEAWQKKPICTVFLHQSK
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atggttgcaaccaatgagagtgaatttgtttttttgcctttaggaggggtcggtgaaata
gggatgaatctggctgcttatggatttggtcccgaaaatcttcgtgaatggcttcttgtt
gatatgggggtgagttttgctggtcctgaattaccaggagcagatcttattttacctgat
attcgttttctagagagtgaaaaacacaatgtgcgcggtcttgttttgacacatgctcat
gaagatcattgtggtgctgtccttgatttatggccaaaacttaaagttccactttattgt
actccttttacggcaggattattagagagtaaaaggcaatctgattttggatttcatgag
atttcattcaacatttttcaagctggtgattgttttcaagtcggttcctttgccattgaa
gctattgctgttaaccattcaattccagaatcggtatctttagcgattacaacgtcttta
ggcactgttatccacactggcgattggaaaattgatcttacaccttctcttggcgctaga
acagatgaaaagagattccgcactttaggcaataaaggtgttttagcattgctttgtgat
tccacgaatgcgtgtcgggatggtataacaccatcagaacaacaagttcagacaagtctt
tctgaaattttttcgaaagcagaggggcaggttgcaatcgttacttttgcctctaatgtt
ggtcgaatacgttcaattgctcttgctgctgaatccgttgggcgtcaggttcttgttgtt
ggacgctcgttaaaacggagtcttatggttgcgcaagaacttggttatatggatggttta
gctccatttgtgacagaagatgattatggttatatcccacgcaaagagatcgttttaatc
gtgacgggtagccaaggagaaccgtgcgctgctttagcaaaattatcacgcaatggcatg
agaaatattgcactttctgctggtgataccgttatttattcatcacgaagcataccagga
aacgaaaaagctattcttgaaatacaaaatcgttttattgatatgggcgttaaagttatt
accaatgaggatgctcttgttcatgtttcaggtcatcctcgtcgcgcagaacttgtacag
atgtatgattgggtaaaaccacagatagttgttcctgtccatggagaagcaacccatctt
actgctcaggcaactttagcgcgccaagctggaattgaaattgtttcgaatattagaaat
gggagtatgttacgccttgcaccagaacctgtagagattattgatcaagttcctgttggt
cgtatctataaggatggttgtcttattggagatgaagatgaattaggaatccgcgaacgt
cgcaaattaagttatgccggttacgttgctgtttccctccatgtgaatagcaagcacgaa
ctgttgggtgatattggtttaaataccttcggattacctgaaaataatggaaaaggggag
aatttgaaagatattctcttaaatgttgtggaaaatacattttataacattccgcgcatt
aaacaaaaaaataaggaacttattcgagaagcaatacgacgtgcagttagggcagctgtc
aatgaagcttggcaaaaaaagcccatttgtacagtttttttacatcagtcaaaatga
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