KEGG   Bartonella machadoae: LNM86_12065
Entry
LNM86_12065       CDS       T08469                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
bmac  Bartonella machadoae
Pathway
bmac03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bmac00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LNM86_12065 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bmac03021]
    LNM86_12065 (rho)
   03019 Messenger RNA biogenesis [BR:bmac03019]
    LNM86_12065 (rho)
Transcription machinery [BR:bmac03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     LNM86_12065 (rho)
Messenger RNA biogenesis [BR:bmac03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     LNM86_12065 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N AAA_25 OB_RNB AAA_22 NACHT S1CSD-TOTE-2
Other DBs
NCBI-ProteinID: UNE54237
LinkDB
Position
complement(2538101..2539366)
AA seq 421 aa
MQEMKLQELKSKNPVELVSFAETLEVENASLMRKQELMFAILKKLASQDVEIIGEGVVEV
LQDGFGFLRSADANYLPGPDDIYLSPAQIQSFSLKTGDTVEGPIRSPKEGERYFALLKIN
TINFEDPEKIRYKIHFDNLTPLYSNERFQMEIQNPTEKDMSSRVIDLISPLGKGQRGLIV
APPRTGKTVLLQNIAHSITTNHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAI
RHVQVAEMVIEKAKRLVEYGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPA
MDILKSGTRKEELLVARQDLHKIFVLRRILTPMNVTDAIEFLIDKLKQTKNNSEFFDSMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgcaagaaatgaaactacaagaacttaaaagtaaaaatcccgttgaacttgtttctttt
gctgaaacattagaagttgaaaatgcttctttgatgcgcaaacaagaattaatgtttgct
attttaaaaaaactcgcttcacaagatgtagaaattattggagaaggagtcgttgaagtt
ttacaagatggatttggatttttgcgatctgctgatgccaattatcttccaggacctgat
gatatttatctttctcctgcgcaaattcagtctttttctttaaaaacaggtgatacggtt
gaaggtcctatacggagcccaaaagaaggcgaacgttattttgcccttcttaaaattaat
acgatcaattttgaagatcctgaaaaaattcgttataaaattcattttgataatcttacg
cctctttactcaaatgaacgttttcaaatggaaatacaaaatcctaccgagaaggatatg
tcatcacgggtcattgacttaatatctccattaggaaaggggcagagaggattaattgtc
gcacctcctcgaacaggaaaaacggttttacttcaaaatattgcccattctatcacgact
aatcatcctgaatgttacctcattgttcttctgattgatgaacgaccagaagaagttact
gatatgcagcgttccgtaaaaggagaagttgtttcctctacttttgatgaacccgcaata
cgtcatgttcaagtagctgaaatggttattgaaaaagcaaaacgccttgttgaatatggg
cgtgatgttgttattcttctcgattctattacgcgcctcggacgtgcttataatacggtt
gttccttcatcaggtaaagttttaacaggtggtgtagatgcaaatgcgctacagcgtcct
aaacgtttttttggtgctgcacgtaatattgaggaaggtggatctttaaccattattgct
acggctttgattgacactggtagtcgtatggatgaggttatttttgaagaatttaaagga
acaggtaattcagaaattgttcttgatcgtaaggttgctgataagcgtattttcccagct
atggatattttgaaatctggaacacgtaaggaagagcttttggttgcacggcaagattta
cataagatttttgtacttcgtcgtattttgacacccatgaatgtaactgatgcgattgaa
ttcttaattgataaattaaaacagacgaaaaacaatagtgaattttttgattcaatgaat
acataa

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