Burkholderia mallei 23344: DM55_2208
Help
Entry
DM55_2208 CDS
T03323
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
bmal
Burkholderia mallei 23344
Brite
KEGG Orthology (KO) [BR:
bmal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bmal03019
]
DM55_2208 (hrpA)
Enzymes [BR:
bmal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
DM55_2208 (hrpA)
Messenger RNA biogenesis [BR:
bmal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
DM55_2208 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
AAA_19
AAA_23
NACHT
T2SSE
nSTAND3
FtsK_SpoIIIE
nSTAND_NTPase5
Motif
Other DBs
NCBI-ProteinID:
AIO53283
UniProt:
A0AAX1X5P2
LinkDB
All DBs
Position
1:2418989..2423116
Genome browser
AA seq
1375 aa
AA seq
DB search
MSNVPKSPAQKRAGTPGEPQPAGAAAPRPPRPRQAPPAQARAPRAERRDAGPEAARAPHA
PRTRCAPNPVPPITFAESLPVSGKRDEIARAIAAHPVVIVCGETGSGKTTQLPKICLALG
RGLGAGGAGLIGHTQPRRLAASSTGRRIAEELGTPFGEVVGYKVRFTDNLAPGASVKLMT
DGILLAETQTDPLLKAYDTLIIDEAHERSLNIDFLLGYLRQILPRRPDLKLIVTSATIDA
ERFARHFGSDERPAPVIEVSGRLYPVEVRYRPIADDRPAAVRHAEGGSSGRDRAKSAREA
ERDLMDGIVDAVDELCREGPGDVLVFLPGEREIRDAAEALRKHHPPHTEILPLFARLSAA
EQERVFKASNARRIVLATNVAETSLTVPGIRYVVDTGLARVKRYSYRNKVEQLQIEPISQ
AAANQRAGRCGRVADGICIRLYEESDFAGRARFTDPEILRSSLASVILRMKSLHLSAIES
FPFIEPPPGRAIADGYQLLNELGAVDDENALTPLGRELARLPLDPRVGRMILAARDQQAL
REVLVIASALSVQDPRERPVDAQEQADQAHRRFADERSEFLQWLRIWAWFEEAVAHKKSN
RQLVDACRQHFLSHLRLREWRDVHSQLLTVVREHGWRLNEADATFEQIHLSLLTGLLGNI
GFKAEDEPHYLGARGIKFHLWPGSALVKKAGRWVMAAELVETSRLYARCIAKIEPEWIER
IGAHLLKKSLSEPHWEKRPAQVAAFERATLYGLTIYHRRRVAFGRQDPARARELFIRGAL
VDGEFDTKLAFFAHNRKLLADIEQLEHKSRRQDVLVDDELIHAFYDQAIPAGIHTGAAFE
RWYRDEVSKSGQPEDKLRLLYLSRDDLMRHEAAGVTTELFPKRVTMAGVEMALAYHFEPG
SPRDGVTLAVPLFALNQVDARRAEWLVPGMLKEKAHLLLKSLPQKLRRHCVPLPEYAAGF
VERAGRERFGAGGLVDALIADVREQTQVATKTSDFKLETLPAHLFMNFKVIDEHGRQLAM
GRNLAQLRAELGAQAQQHFQKIAAAATLAPAGEPAAAAAGASGARARRVPLGAPPRAAEP
AAQAGAAAGATALYENLTTWNFGKLPELLEIRRRGETLFGYPALVDRGTHCDVEVFDSPD
EAARIHRAGLRRLFALQLKEPIKYLEKNLPGLREMAIQYMSLGTQDELRDQLIATALDRA
CLQEPLPADDASFHARRDEGRSRLNLLAQEIARLVGQILAEYAGLAKKLAQAKPFPAAHA
DMQGQLAALVGKRFVVDTPYAQLAHFPRYLKGIALRIDKLKADPARDARQAAELQPLAQH
YQRSVAQRGGVADARLAEFRWLLEELRISLFAQELRTPMPVSVKRLYKVWESMQR
NT seq
4128 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatgtacctaaaagtcccgcgcaaaaacgtgcgggcacgccgggcgagccgcag
cccgccggcgccgctgcgccgcggccaccgcgcccccggcaggcgccgcccgcgcaggcg
cgcgcgccgcgcgccgagcgccgcgacgccggccccgaagccgcccgcgcgccgcatgcg
ccgcgcacgcggtgcgcgccgaatcccgttccgccgatcacgtttgccgaaagcttgccc
gtgtcgggcaagcgcgacgagatcgcgcgcgcgatcgccgctcacccggtcgtgatcgtc
tgcggcgagacgggctcgggcaagaccacccagttgccgaagatctgcctggcgctcggc
cgcggcctcggcgcgggcggcgcgggcctgatcggccacacgcagccgcgccggctcgcg
gcgtcgtcgacgggccgccggatcgccgaggagctcggcacgccgttcggcgaggtggtc
ggctacaaggtgcgcttcaccgacaacctcgccccgggcgcctcggtcaagctgatgacg
gacgggatcctgctcgccgagacgcagaccgacccgctgctgaaggcgtacgacaccctc
atcatcgacgaggcgcacgagcgcagcctgaacatcgatttcctgctcggctacctccgg
cagatcctgccgaggcggccggacctgaagctgatcgtcacgtcggcgacgatcgacgcc
gagcgcttcgcgcgccatttcggcagcgacgagcggcccgcgccggtgatcgaggtgagc
gggcggctgtatccggtcgaggtgcgctaccggccgatcgccgatgaccggccggccgcc
gtccggcacgcggaaggcgggagctcgggccgcgatcgcgcgaagagcgcgcgcgaggcc
gagcgcgacctgatggacggcatcgtcgacgcggtcgacgagctgtgccgcgagggcccc
ggcgacgtgctcgtgttcctgcccggcgagcgcgagatccgcgacgcggccgaggcgctg
cgcaagcaccatccgccgcacaccgagatcctgccgctgttcgcgcggctgtccgcggcc
gagcaggagcgcgtgttcaaggcgtcgaacgcgcggcggatcgtgctcgcgacgaacgtc
gccgaaacgtcgctgaccgtgccgggcatccgctatgtcgtcgacacgggcttggcgcgc
gtgaagcgctattcgtaccggaacaaggtcgagcagttgcagatcgagccgatctcgcag
gcggccgcgaaccagcgcgcgggccgctgcggccgcgtcgccgacggcatctgcatccgc
ctctacgaggaaagcgatttcgccggccgcgcacgcttcaccgatccggaaatcctgcgc
tcgtcgctcgcgtcggtgatcctgcggatgaaatcgctgcatctgtcggcgatcgaatcg
tttccgttcatcgagccgccgccgggccgcgcgatcgcggacggctatcagctgctcaac
gagctcggcgcggtcgacgacgagaacgcgctcacgccgctcggccgcgagctcgcgcgg
ctgccgctcgatccgcgcgtcggccggatgatcctcgccgcgcgcgaccagcaggcgctg
cgcgaagtgctcgtgatcgcgagcgcgctgtccgtgcaggacccgcgcgagcgcccggtc
gacgcgcaggagcaggccgaccaggcgcaccggcgcttcgccgacgagcgctccgagttc
cttcagtggctgcggatctgggcgtggttcgaggaggcggtcgcgcacaagaagtcgaac
cggcaactcgtcgacgcgtgccggcagcatttcctgtcgcacctgcggctgcgcgaatgg
cgcgatgtccactcgcagctcctgaccgtcgtgcgcgagcacggctggcggctgaacgaa
gccgatgcgacgttcgagcagatccatctgtcgctgttgacgggcctgctcggcaacatc
ggcttcaaggccgaggacgagccgcactacctcggcgcgcgcggcatcaagttccatctg
tggccgggctccgcgctcgtgaagaaggcggggcgctgggtgatggcggccgagctcgtc
gagacgagccgcctctatgcgcgctgcatcgcgaagatcgagcccgaatggatcgagcgg
atcggcgcgcatctgctgaagaaatcgctgtccgagccgcactgggagaagcggcccgcg
caggtcgccgcgttcgagcgcgcgacgctgtacgggctcaccatctatcaccggcggcgc
gtcgcgttcggccggcaggacccggcgcgcgcgcgcgagctgttcatccgcggcgcgctc
gtcgacggcgaattcgacacgaagctcgcgttcttcgcgcacaaccgcaagctgctcgcc
gacatcgagcagctcgagcacaaatcgcgccgccaggacgtgctcgtcgacgacgagctg
attcacgcgttctacgatcaggcgattccggccggcattcacacgggcgccgcgttcgag
cgctggtatcgcgacgaggtgagcaagagcgggcagccggaagacaagctgcgcctgctg
tatctgtcgcgcgacgatctgatgcgccacgaggcggcgggcgtgacgaccgagctgttt
ccgaagcgcgtgacgatggcgggcgtcgagatggcgctcgcgtaccacttcgagccgggc
tcgccgcgcgacggcgtgacgctcgcggtgccgctcttcgcgctgaaccaggtcgacgcg
cgccgcgccgaatggctcgtgcccggcatgctcaaggagaaggcgcatctgctgctgaaa
tcgctgccgcagaagctgcgccgccattgcgtgccgctgccggagtacgcggcgggcttc
gtcgagcgcgccgggcgcgagcgcttcggcgcgggcggcctcgtcgacgcgctgatcgcc
gacgttcgcgagcagacgcaggtcgcgacgaaaacgtccgatttcaagctggagacgctg
cccgcgcacctgttcatgaacttcaaggtgatcgacgagcacggccggcaactcgcgatg
gggcgcaatctcgcgcaactgcgcgcggaactgggcgcgcaggcgcagcagcacttccag
aagatcgccgccgcggcgacgctcgcgccggcgggcgagcccgccgcggcggccgccggc
gcgagcggcgcgcgggcacggcgcgtgccgctcggcgcgccgccgcgggcggccgagccg
gcggcgcaagcgggcgcggccgccggcgcgaccgcgctctacgagaacctgacgacgtgg
aacttcggcaagctgccggaactcctcgaaatccgccggcgcggcgagacgctgttcggc
tacccggcgctcgtcgatcgcggcacgcattgcgacgtcgaggtgttcgattcgcccgac
gaggcggcgcggatccaccgcgcgggcctgcggcgcctgttcgcgctgcaactgaaggag
ccgatcaagtatctggagaagaacctgccggggctgcgcgagatggcgatacagtacatg
tcgctcggcacgcaggacgagctgcgcgaccagctgatcgcgaccgcgctcgaccgcgcg
tgcctgcaggaaccgctgcccgccgacgacgcgagcttccacgcgcgccgcgacgagggc
aggagccgcctgaatctgctcgcgcaggagatcgcgcggctcgtcgggcagatcctcgcc
gagtacgcggggctcgcgaagaagctcgcgcaggccaagccgttcccggccgcgcacgcg
gacatgcagggccagctcgccgcgctcgtcggcaagcgcttcgtcgtcgatacgccttac
gcgcagcttgcgcacttcccgcgctacctgaagggaatcgcgctgcgcatcgacaagctg
aaggccgatcccgcgcgcgacgcgcggcaggcggccgagctgcagccgctcgcgcagcat
tatcagcgctcggttgcgcagcgcggcggcgtcgcggacgcgcggctcgccgaattccgc
tggctgctcgaggagctgcggatctcgcttttcgcgcaggagctgcgcacgccgatgccg
gtatcggtcaagcggctctacaaagtgtgggagtcgatgcagcgctga
DBGET
integrated database retrieval system
