Bombyx mandarina (wild silkworm): 114242943
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Entry
114242943 CDS
T05882
Name
(RefSeq) exosome complex component RRP4
KO
K03679
exosome complex component RRP4
Organism
bman
Bombyx mandarina (wild silkworm)
Pathway
bman03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bman00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114242943
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bman03019
]
114242943
Messenger RNA biogenesis [BR:
bman03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
114242943
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
114242943
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
RRP40_S1
Motif
Other DBs
NCBI-GeneID:
114242943
NCBI-ProteinID:
XP_028030077
UniProt:
A0A6J2JM36
LinkDB
All DBs
Position
Unknown
AA seq
329 aa
AA seq
DB search
MVSHHIIILVYEFVVHNSQLAKRELKKTLEMVSHVSIKLASERVNHSVASNNDPPRFYTP
GEVITGIQDFMRGHGTYAEDDCLKASVAGVMQKVNKLICIRPLKSRYVGEIGDVVVGRVL
EVQQKRWKVDTNSRLDSILQLSSVNLPGGELRRRSEEDEQMMRKHLQEGDLISAEVQNVF
SDGSLSLHTRSLKYGKLSQGTLIKVFPSLIKRRKNHFHNLPCAVSVIIGNNGYIWISPHK
SDILMEGNKDAIENYEIQPVGKSERETMARVKNCILALVASKMMLDDTSIMFAFEESLKY
DNVKELLDPEAMLDVAFLTQHRINIIAEE
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atggtatcgcatcatattatcatattggtctatgagttcgttgtacacaattcacaatta
gcaaagagggagcttaaaaaaacattagaaatggtcagtcatgtatctataaaactcgca
tctgaaagagtaaatcattcggttgcctcaaataatgacccgccgcgtttttacactcct
ggcgaagtcataactgggatacaagattttatgagaggccacggaacttacgcagaagat
gattgcctaaaagcatctgttgctggggttatgcaaaaagtaaataaacttatatgcatt
cgcccattgaagagtcgttacgttggagaaataggcgatgtggtagtcggaagagtattg
gaagttcaacagaaaagatggaaagttgataccaattcacgacttgattcaatacttcaa
ctttcttcagtaaatctacctggcggagaattgagaaggcgttcagaagaggatgagcag
atgatgagaaaacatttacaggaaggtgatttgataagcgctgaagtacagaatgtattt
tctgatggttcgctctcattgcatacaagaagtttgaaatatggcaagctttcacaggga
actttaataaaagtattcccgtcattgataaagcgcagaaaaaatcattttcacaactta
ccatgtgcagtatctgtcataatagggaataatggatatatatggattagtccacacaaa
agtgatattcttatggaaggaaataaggatgcaattgaaaattatgaaattcagcctgtt
gggaaatcagaaagagaaacgatggcgcgagtgaaaaattgtattttggcacttgtggca
tctaagatgatgttagatgatactagcataatgtttgcattcgaagaaagtctcaaatac
gacaatgtaaaggaactcttggatcctgaagctatgcttgacgtagcatttttaactcag
catagaataaatattattgcagaagagtga
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