Bombyx mandarina (wild silkworm): 114243326
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Entry
114243326 CDS
T05882
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform X1
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
bman
Bombyx mandarina (wild silkworm)
Pathway
bman03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bman00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114243326
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bman03041
]
114243326
Enzymes [BR:
bman01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114243326
Spliceosome [BR:
bman03041
]
Complex C
Other components
Step II factors
114243326
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
T2SSE
AAA_30
AAA_14
Flavi_DEAD
ATPase
AAA_16
AAA_7
PhoH
Sigma54_activat
cobW
SRP54
Sigma54_activ_2
ABC_tran
Motif
Other DBs
NCBI-GeneID:
114243326
NCBI-ProteinID:
XP_028030582
UniProt:
A0A6J2JNI5
LinkDB
All DBs
Position
Unknown
AA seq
1186 aa
AA seq
DB search
MADPEENVHRLEGTSGDTPGGLIIRQKDKPADFQFAKPSLLGLDKLAAAKRKQNRLISFQ
NEENEDEGTNVDNVVKERKYRKHNEETPTYTGGISEQARERLIERMQKREKQVKEKGVHN
STQEEKKTQAKDDDDYYRHYHRHDRRNNDYRRNQDRDRRRDRDGDSRDKDRNRSDRDRRD
RDSERSSSRRSYYNPKFKDEPKTPSISVLKPTEKTAWDDDDDDPRSTVRKSSWDFPTPLP
RDYDQRSERGNRTMRDYKGRPYENTPRATPHKFASSRRIVDVDDPDWQEAEKKLDRDWYN
MGEGEADESDPFGNTSAEYMARKEEQIEKRRNRKVSAQRQQIDKDNDLWERNRMLTSGVV
HAINVNNDMDEESVDRVHLLVHNIVPPFLDGRIIFTKQPEPVIPVKDPTSDMAVNARKGS
ALVKAFREQKERRKAQKKHWKLEGTKLGNIMGIQREKEELEDGPTREAYKYAEHLDKEAQ
EPESKSDFVKKMSISEQRRYLPVFAVREELLQVIRENNVVIIVGETGSGKTTQLTQYLHE
EGFSRLGMIGCTQPRRVAAMSVAKRVSDEMHTRLGDEVGYAIRFEDCTSPSTVIKYMTDG
ILLREGLREPDLDNYSAIIMDEAHERSLSTDMLFGLLREVVARRSDLKLIVTSATMDSTK
FSTFFGNVPTFTIPGRTFPVETFFSKNPCEDYVDGAVKQALQIHLQPDEGDILIFMPGQE
DIEVTCEVLTERLGDLDNAPPLTVLPIYSQLPADLQAKIFQRAPPGQRKCIVATNIAETS
LTVDGIMYVIDCGYCKLKVYNPRIGMDALQIYPVSQANARQRAGRAGRTGPGKAFCLYTQ
RQYQHELLASTVPEIQRTNLANTVLLLKSLGVEDLLAFHFMDPPPQDTILNSMYQLWILG
ALDGTGSLTALGRQMAEFPLDPAQCHMLIVAADMGCSAEVLIIVSMLSVPSVFYRPQGRE
EEADAVKEKFQVPESDHLTLLHLYNQWKSNNYSSQWCTEHFVHAKAMRKVREVRQQLKDI
LQQQRLPLVSCGTDWDTVRKCICSAYFQQAARLKGIGEYVNCRTGMPCHLHPTSALFGLG
CSPDYVVYHELTMTAREYMHCVTAVDARWLAELGPMFFSVKETGKSNRDKRKEAAVHLQR
MEEEMKEAEAKMAEDRKKKDEDVPVKQEVATPGLGTPRRTPQRLGL
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atggccgatcccgaagaaaatgtccatcgtttggagggaacttctggtgacaccccaggt
ggtttaatcataagacaaaaggataaacctgcagattttcaatttgccaagccttcctta
ctgggtctcgataaactagctgctgcgaaacgtaagcagaatcgccttatatcgttccaa
aacgaagaaaacgaggacgaaggaacgaatgtggataatgtggtgaaagaacgtaaatac
agaaagcacaatgaagaaactcccacatatactggcggtatatcagagcaggcacgggaa
agactcattgagcgaatgcagaaaagagaaaagcaagtaaaggaaaaaggtgtacacaat
tctactcaggaagaaaagaaaacacaggccaaagatgatgatgattattatcgtcattat
cacagacacgatagaaggaacaatgactacagaaggaatcaggatagagataggaggcga
gacagggatggggacagtagagataaggatagaaatagaagtgacagagatagaagagat
cgtgatagtgaaaggagtagttcaagaagaagttattacaatcctaaatttaaagatgaa
cccaaaaccccaagtattagtgttctaaagccaacagaaaagactgcctgggatgatgat
gatgatgacccaaggtctacagtacgcaaatccagctgggactttccaacacctctgcct
agggactatgatcagcgtagcgaaagaggcaatagaacaatgcgggattataaaggcaga
ccgtatgagaatactcctagggccacaccgcataagtttgcgagttctagaagaatagta
gatgtagacgatcctgattggcaagaagcagaaaagaaattagatagagattggtacaac
atgggagaaggtgaagccgatgaatcggatccgttcggcaacacgagcgcggagtacatg
gcgcgcaaggaggaacaaatagagaaacgtcgcaacaggaaggtgtccgctcagagacag
caaatagacaaggacaacgacctctgggaacggaacaggatgctgacgagcggggtcgtc
cacgccatcaacgtcaacaacgatatggatgaggagagtgttgaccgcgtccacctgctg
gtgcacaacatcgtgcctccattcctcgacggaagaataatattcacgaagcagccggag
cccgtgataccggtaaaagatcctacatcggatatggcggtaaacgcacgcaaaggctcg
gccttagtgaaagcattccgagaacaaaaggagagacgaaaagctcagaagaaacattgg
aaattagagggaaccaaactaggcaatatcatgggaatacagagggaaaaagaagaactc
gaagatggtcctacaagagaagcttacaaatacgcggagcatttagataaagaagctcag
gaaccggaatcgaagtcggacttcgtgaagaagatgtccatatcggaacagaggcgctac
ctgcccgtgttcgccgtccgcgaggagctgctgcaggtcatccgggagaacaacgtcgtc
atcatagtcggcgagacgggtagcggcaagaccacgcagctcacgcagtacctgcacgag
gaggggttcagccggctcggcatgatcgggtgcacgcagccgcgccgcgtcgccgccatg
tccgtcgccaagcgggtctccgacgagatgcacacgcgcctcggtgacgaggtcgggtac
gccatacggttcgaagactgcacatctccgagcacggtcatcaagtacatgacggacggc
atcctgctccgcgagggactccgggagccggacctggacaactactccgccatcatcatg
gacgaggctcacgagcgctcactgtccaccgacatgctcttcgggctgctgcgggaggta
gtagctcgtcgctccgacctgaagttgatcgtcacgtcagccacgatggattcgactaag
ttctcgacgtttttcggtaacgtgccgactttcaccatccccggcaggaccttccccgtg
gagacgttcttctcaaagaacccgtgcgaggattacgttgacggagctgtcaaacaagct
ttacaaattcatctgcagccagacgagggcgacattctgatattcatgcctggtcaggaa
gacatcgaagttacgtgcgaggtattaacagaaagactgggcgatttagacaacgcgccc
cccctgaccgtcctgccgatatactctcagctccccgctgacttgcaggcgaagatattc
cagcgagcgccgcccggacagaggaagtgtatcgtcgccaccaatatagcagaaacgtca
ctgaccgtggacgggatcatgtacgtcatagactgcggatattgcaagctgaaggtttac
aacccgaggatcggtatggacgccttgcagatatatccggttagccaggccaacgcccgg
cagcgggcgggccgagccgggcgtaccggcccgggcaaggccttctgtctgtacacgcag
cggcagtaccagcacgagctgctggcgtccactgtgccggagatacagaggacgaatctg
gcaaacaccgtgttgttgcttaagtccttgggcgttgaagacctactagccttccacttc
atggatcccccaccacaggacacgatcctgaactcgatgtaccagctgtggatcctgggc
gcgctggacggcacgggctcgctgacggcgctcgggcggcagatggcggagttcccgctg
gacccggcgcagtgccacatgctcatcgtggccgccgacatgggctgcagcgccgaggtg
ctcatcatcgtgtcgatgctgtcggtgccttcagtcttctaccgtcctcaaggtcgcgag
gaagaagccgacgcagtcaaagagaaattccaagttcccgaatcagatcacttgaccctc
ctacacttgtacaaccagtggaaatcaaacaactactccagtcagtggtgcacggagcac
ttcgttcacgccaaggcgatgaggaaagtgcgcgaggttcgccagcagctgaaggacatt
ctgcaacagcagcggctgccgctcgtgtcctgcggcactgactgggacaccgtcaggaaa
tgcatctgttcagcttacttccagcaggcggcgcggctgaagggcatcggcgagtacgtg
aactgccgcaccggcatgccgtgccacctgcaccccacctcggcgctgttcgggctgggc
tgcagccccgactacgtggtgtaccacgagctcaccatgacggcgcgcgagtacatgcac
tgcgtcaccgccgtggacgcgcgctggctggccgagctggggcccatgttcttctccgtc
aaggagaccggcaaatcgaatcgagacaagcgtaaagaggcagcggtccacctccaacgc
atggaagaagagatgaaggaggccgaggccaaaatggcagaagatcgcaagaagaaagac
gaagacgttcccgtgaagcaggaggtggccactccggggctgggcaccccgcgccgcaca
ccgcagcgcctgggcctgtag
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