Bombyx mandarina (wild silkworm): 114244580
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Entry
114244580 CDS
T05882
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
bman
Bombyx mandarina (wild silkworm)
Pathway
bman03020
RNA polymerase
bman03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bman00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
114244580
09124 Replication and repair
03420 Nucleotide excision repair
114244580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bman03021
]
114244580
03400 DNA repair and recombination proteins [BR:
bman03400
]
114244580
Enzymes [BR:
bman01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
114244580
Transcription machinery [BR:
bman03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
114244580
DNA repair and recombination proteins [BR:
bman03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
114244580
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
114244580
NCBI-ProteinID:
XP_028032237
UniProt:
A0A6J2JTG4
LinkDB
All DBs
Position
Unknown
AA seq
1175 aa
AA seq
DB search
MYDTEDDQYEEEDVEITPELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVED
SPPIELQAEAQHFSGEMETPPKYRLKFDQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYS
APLYVDITKTIEKEHEDPIETQHQKTFIGKIPIMLRSTYCLLNSLTDRDLSELNECPLDP
GGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAYKTEIRSCLEHSSRPTSTLWVNMMA
RGGQNIKKSAIGQRIMAIVPYIKQDIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMV
KPSLDEAFVIQEQNVALNFIGSRGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKK
AYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLLKEVRMYAQK
FIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSH
LRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPI
LEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRHMDIIVSEV
SMIRDIRDREIRIYTDAGRICRPLLIVNNGVLLLKKKHIDDLKEKDYNNYGWQNLVASGV
VEYIDTLEEETVMIAMSLDDLNQVKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIV
AILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKRNGEQEEQFEKPTRQTCQGM
RNALYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELEGTTKRFTKRDASTFLRNSE
TGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQKISSLLQDYGY
HLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRAR
DGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFECKGC
KNKTQISQIRLPYAAKLLFQELMSMNIAPRLMVVS
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgtatgatacagaagatgatcaatacgaagaggaagatgtggaaataacacctgagctt
tggcaagaagcttgttggattgtcatcaacgcttatttcgatgaaaaaggtctagtgaga
cagcaattagatagcttcgatgaatttattcaaatgtcggtacaacgtatagttgaagat
tctccacccatagagttacaagcagaagcacaacatttctctggtgagatggaaacacca
ccaaaatatcgtcttaaatttgaccaaatttatttatctaaacctactcattgggagaaa
gatggagctccatctcccatgatgcccaatgaagcacgtcttcgtaatttaacatattcg
gcacctttatatgttgatattacaaaaacaatagagaaagaacatgaggatcctattgaa
acgcaacatcagaaaacatttattggcaagattcctattatgcttagatctacatattgc
ttactaaacagtttgactgaccgtgacttgtcagaattgaatgaatgccccttagatcct
ggtggttacttcattattaatggatcagaaaaagtactaattgcacaggaaaaaatggct
accaatactgtctatgtattcagcatgaaggatggcaaatatgcttacaaaacagaaata
agatcatgtctggaacatagttctagaccgacatctacattatgggttaatatgatggct
cgaggaggacaaaatataaagaaatctgctattggtcaaagaattatggcaattgtccca
tatatcaaacaagacatacctataatgattgtattcagagctttaggttttgttgctgat
agagatatattggaacacattatatatgattttgatgatccagaaatgatggaaatggtt
aagccatctcttgatgaggcttttgtcattcaagaacaaaatgtagcactcaattttatt
ggaagccgaggggcacgcccaggtgtcaccaaagaaagacgtattaaatatgctagagaa
atcttacaaaaggaaatgttgccacatgttggagtatcagatttttgtgaaacaaaaaaa
gcttattttctaggctacatggtacacagattattattagctgctttgggtcgaagagaa
ctggatgatagagatcattatggcaacaaaagattagatttagcaggaccacttttggct
tttctatttagaggcttattcaaaaatttactaaaagaagtccgaatgtatgctcaaaaa
tttattgatagaggaaaagatttcaacttggaacttgctatcaaaacaaaaatcatcact
gatggtcttcgttattctttggcaactggtaattggggtgaccaaaagaaagctcatcag
gcccgagctggagtatctcaagtgttgaacagattaacttttgcatctactttatcccat
ttaagacgtgtcaattctccaattggacgtgatggtaaacttgctaaaccacgtcaattg
cacaatactttatggggtatgatttgtcctgctgaaactccagagggagctgctgttggc
ttagtgaagaatttagcattaatggcttatatctcagtaggaagtcaaccttcaccaatt
ttggagttcttggaagaatggtcaatggaaaacttggaagaaattgcaccatcagctata
gctgatgccacaaaaatatttgtgaatggttgttgggtaggaatacacagggaccctgaa
cagttgatggctacactacgtaaactaagacgtcatatggacatcattgtctctgaagtc
agtatgattagagatataagagacagagaaatcagaatctatacagatgcaggtagaatt
tgtagaccattacttattgtcaataatggtgtcttattgttaaaaaagaagcacatagat
gatttaaaagaaaaggactacaataactatggttggcaaaatttggtggctagtggagta
gttgaatatattgatactttggaagaagaaactgtgatgattgccatgagtttagatgac
ttgaatcaagttaaagaatatgcatattgtactacttatacacattgtgagattcatcct
gcaatgattctgggtgtctgtgcgtctattattccattcccagatcataatcaaagtccc
agaaatacttatcaaagtgctatgggtaaacaagctatgggagtttatatcacaaatttc
catgttagaatggatacactggctcatgttttgtattatccccacaaacccctggttaca
acaagatctatggaatacttacgatttagagaattgccagcaggaattaactctattgtt
gctattctttgttatactggatataaccaagaagacagtgttattttgaatgcatctgct
gtagagagaggattctttagatccgtattttaccgttcatacaaagattctgaatctaaa
agaaatggagaacaagaagaacagtttgaaaaaccaaccagacagacatgtcagggtatg
aggaatgctctgtatgacaaattagatgatgatggtattattgctcctggtattagagta
tcaggtgatgatgttgtcataggaaaaactataactttaccagaaaatgatgatgaattg
gaaggtacaacaaaacgatttacaaagcgagatgcgtccactttcttacgtaatagtgaa
actggaattgtcgaccaagtaatgttgacattaaatagtgaaggttataaattttgtaaa
attcgagtcagatctgtacgcatcccgcaaattggagataagtttgcttcacgacatggt
caaaaaggaacatgtggaattcaatacaggcaagaagatatgccatttacttgcgaaggt
ataacaccagatatcattattaatcctcacgctatcccttcgcgtatgacaattggtcac
ttgattgagtgtattcaagggaaagtatcttccaataagggagagatcggtgatgcaacc
ccattcaatgatgccgtaaatgtgcaaaaaatatcatctctgttacaagattatggttac
catctacgtggtaatgaagtcatgtacaatgggcatacaggccgtaaaattaatgcgcaa
gtttttttgggaccaacttactaccaacgtttaaagcacatggtcgatgataaaattcat
tctagagctagaggtccagtacaaattctagtgagacagcctatggaaggtagggcaaga
gatggtggattacgttttggtgaaatggaacgtgattgtcagattgcacacggagctgcc
caatttttacgtgaacgtttatttgaagtatcagatccttaccgtatacacgtgtgtaat
ttctgcggcctgatcgctatagctaatttgcgtaacaatacatttgaatgcaaaggctgc
aaaaacaaaactcaaatttcgcaaatccgtttaccatatgcagccaagttactattccag
gaactaatgtcgatgaatatcgctcctagactaatggtagtgagttaa
DBGET
integrated database retrieval system
