KEGG   Bombyx mandarina (wild silkworm): 114244918
Entry
114244918         CDS       T05882                                 
Name
(RefSeq) exosome complex component RRP42
  KO
K12589  exosome complex component RRP42
Organism
bman  Bombyx mandarina (wild silkworm)
Pathway
bman03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bman00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    114244918
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bman03019]
    114244918
Messenger RNA biogenesis [BR:bman03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     114244918
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     114244918
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 114244918
NCBI-ProteinID: XP_028032683
UniProt: A0A6J2JTT1
LinkDB
Position
Unknown
AA seq 310 aa
MAGLLLSSTEKVFIVHGVQEDFRSDGRSNIDYRPMELETDVVSHASGSARLRLANTDILV
GIKTEIDTPKPDKPDMGKIEFFVDCSANATPEFEGRGGENLASSISNTMQRAYHSSQAFD
LKQLCIVEGKQCWKLYVDILILECGGNLFDAVSLATKAALFNTRIPLVKALLMDGGNVDL
QLSDDPYDFKFLDVGSAPLLVTLCKIGEKCVVDPSAEEESCSVISLIVGITGNSKSYCAD
KGASNLSDVDIKCSTISMNGPGSLAPKTLKNAIHQGIIAAKVLDDSLGQALLRERRENIN
SMKSSYGFLK
NT seq 933 nt   +upstreamnt  +downstreamnt
atggcaggactgttactaagttctacagaaaaagtttttattgttcacggtgtacaagag
gactttcgttccgatgggcgatcaaacattgactataggcccatggaactagaaacagat
gtagtgagccacgctagtggctcagcgcggcttcgtcttgcaaacacagacattttagtt
ggcattaaaacagaaatagatacaccaaagccagacaaaccagatatgggaaaaattgag
ttttttgttgattgctcagcaaatgccacaccggaattcgaagggcgtggtggagaaaat
ttagctagcagcatttcaaacacaatgcaaagagcatatcactcatcacaagcctttgat
ttgaagcaattatgcattgtagaaggcaaacagtgctggaaactttatgttgatatattg
atcttggaatgtgggggtaatttgtttgatgcagtttcattagcaaccaaagcagctctg
tttaacacaaggataccattagtaaaagccttgttgatggatggaggaaatgttgattta
caactctcagatgatccttatgatttcaaatttctagatgttggttctgcacctttgttg
gtaacactatgtaaaataggagaaaaatgcgtggtagatccctcagctgaagaagaaagc
tgcagtgtaatatcattgatagttggaattactggaaacagcaaatcttactgtgcagat
aaaggagcttctaacctatctgatgttgacattaaatgtagtacaatcagtatgaacgga
ccaggcagtttagcaccaaagacattaaagaatgcaattcaccagggcatcattgctgca
aaggtactagacgattcattaggacaagccttattgcgtgaacgacgagaaaatatcaac
tcaatgaaaagttcatatggatttcttaaataa

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